prot_H-elongata_contig113714.1095.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig113714.1095.1
Unique Nameprot_H-elongata_contig113714.1095.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length77
Homology
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BLAST of mRNA_H-elongata_contig113714.1095.1 vs. uniprot
Match: D8LRE0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRE0_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 1.160e-34
Identity = 59/76 (77.63%), Postives = 66/76 (86.84%), Query Frame = 0 
Query:    1 RGSKDARSFRPSTLAEINMMNKYEPLTMKCGSRTIPIACGNSLEDFLLMCGCVFALWSFILGFSSLLLKSALDTDL 76
            RGSKDARSFRPSTLAEINMMN+YEPL +KCG +T  I CGNSLED LL+ GC+ ALWSF+LG S LLLKSA+DTDL
Sbjct:   44 RGSKDARSFRPSTLAEINMMNRYEPLELKCGGKTFGIGCGNSLEDVLLIMGCILALWSFVLGVSGLLLKSAIDTDL 119
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig113714.1095.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRE0_ECTSI1.160e-3477.63Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 69..76
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..45
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 46..68
NoneNo IPR availableTMHMMTMhelixcoord: 46..68

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig113714contigH-elongata_contig113714:1381..1611 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig113714.1095.1mRNA_H-elongata_contig113714.1095.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig113714 1381..1611 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig113714.1095.1 ID=prot_H-elongata_contig113714.1095.1|Name=mRNA_H-elongata_contig113714.1095.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
RGSKDARSFRPSTLAEINMMNKYEPLTMKCGSRTIPIACGNSLEDFLLMC
GCVFALWSFILGFSSLLLKSALDTDL*
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