prot_H-elongata_contig113103.1066.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig113103.1066.1
Unique Name	prot_H-elongata_contig113103.1066.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	123

Homology

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BLAST of mRNA_H-elongata_contig113103.1066.1 vs. uniprot
Match: D7FQT5_ECTSI (SRP101, alpha subunit of the signal recognition particle receptor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQT5_ECTSI)

HSP 1 Score: 192 bits (489), Expect = 3.390e-56
Identity = 92/114 (80.70%), Postives = 106/114 (92.98%), Query Frame = 0

Query:    2 VFGAGYAKDSSSVAREAIKHAEDQGYECVLIDTAGRMQNNEPLMRALSKVINENEPDLVLFVGEALVGNDGVNQLHMFNQVLANNSPMGRLHQIDGIILTKFDTIDTKVCSSIS 115
            +F  GYA+DSS+VAREA+KHA ++GY+CVLIDTAGRMQNNEPLMRALSK+INENEP+LVLFVGEALVGNDGVNQL MFNQ LANNSP GR HQIDG++LTKFDTIDTKV +++S
Sbjct:  441 LFEKGYARDSSAVAREAVKHAAEEGYDCVLIDTAGRMQNNEPLMRALSKLINENEPELVLFVGEALVGNDGVNQLQMFNQALANNSPAGRYHQIDGVVLTKFDTIDTKVGAALS 554

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BLAST of mRNA_H-elongata_contig113103.1066.1 vs. uniprot
Match: K8Z840_NANGC (Signal recognition particle receptor subunit alpha n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z840_NANGC)

HSP 1 Score: 158 bits (399), Expect = 1.060e-44
Identity = 74/115 (64.35%), Postives = 99/115 (86.09%), Query Frame = 0

Query:    1 NVFGAGYAKDSSSVAREAIKHAEDQGYECVLIDTAGRMQNNEPLMRALSKVINENEPDLVLFVGEALVGNDGVNQLHMFNQVLANNSPMGRLHQIDGIILTKFDTIDTKVCSSIS 115
            +++  GY KD ++VA+ AIK A D+G++ VL+DTAGRMQN EPLMRAL+K++++N+PDLV+FVGEALVGNDG++QL +FNQ LAN SP G+ HQIDGIILTKFDT+D KV +++S
Sbjct:  226 DLYDKGYHKDPAAVAKAAIKEATDKGHDVVLVDTAGRMQNKEPLMRALAKLVSDNQPDLVVFVGEALVGNDGIDQLTVFNQALANYSPPGKTHQIDGIILTKFDTVDEKVGAALS 340

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BLAST of mRNA_H-elongata_contig113103.1066.1 vs. uniprot
Match: A0A3M6VSC8_9STRA (SRP54 domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VSC8_9STRA)

HSP 1 Score: 160 bits (405), Expect = 5.760e-44
Identity = 77/114 (67.54%), Postives = 97/114 (85.09%), Query Frame = 0

Query:    2 VFGAGYAKDSSSVAREAIKHAEDQGYECVLIDTAGRMQNNEPLMRALSKVINENEPDLVLFVGEALVGNDGVNQLHMFNQVLANNSPMGRLHQIDGIILTKFDTIDTKVCSSIS 115
            +F  GYAKD +SVA+EAIK+  D GY+CVLIDTAGRMQNNEPLMRAL+K+++ NEPDLVLFVGEALVGNDG++QL MF++ LA+ S     H+IDGI++TKFDTID KV +++S
Sbjct:  452 LFQKGYAKDPASVAKEAIKYGADHGYDCVLIDTAGRMQNNEPLMRALAKLVSNNEPDLVLFVGEALVGNDGIDQLSMFDRALADYSDRREPHRIDGIVITKFDTIDDKVGAAVS 565

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BLAST of mRNA_H-elongata_contig113103.1066.1 vs. uniprot
Match: A0A7S1U981_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U981_9STRA)

HSP 1 Score: 156 bits (395), Expect = 1.010e-43
Identity = 75/117 (64.10%), Postives = 96/117 (82.05%), Query Frame = 0

Query:    2 VFGAGYAKDSSSVAREAIKHAEDQGYECVLIDTAGRMQNNEPLMRALSKVINENEPDLVLFVGEALVGNDGVNQLHMFNQVLANNSPMGRLHQIDGIILTKFDTIDTKVCSSISPQH 118
            +F  GYA+D SSVA  A  HA + GY+ +L+DTAGRMQNNEPLM+ALSK+I++N PDL LFVGEALVGNDG++QL MFN+ LA+NSP G  H++DGI+LTKFDTID KV +++S  +
Sbjct:  270 LFERGYARDPSSVAAAAKVHARENGYDVLLVDTAGRMQNNEPLMKALSKLISDNRPDLTLFVGEALVGNDGIDQLMMFNESLADNSPPGTHHEVDGIMLTKFDTIDDKVGAALSMSY 386

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BLAST of mRNA_H-elongata_contig113103.1066.1 vs. uniprot
Match: A0A0P1B7H3_PLAHL (Signal recognition particle receptor subunit alpha n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B7H3_PLAHL)

HSP 1 Score: 159 bits (401), Expect = 2.200e-43
Identity = 75/114 (65.79%), Postives = 98/114 (85.96%), Query Frame = 0

Query:    2 VFGAGYAKDSSSVAREAIKHAEDQGYECVLIDTAGRMQNNEPLMRALSKVINENEPDLVLFVGEALVGNDGVNQLHMFNQVLANNSPMGRLHQIDGIILTKFDTIDTKVCSSIS 115
            +F  GYAKD +SVA+EA+K+  + GY+CVLIDTAGRMQNNEPLMRAL+K++++NEPDLVLFVGEALVGNDG++QL MF++ LA+ S     H+IDGI++TKFDTID KV +++S
Sbjct:  454 LFQRGYAKDPASVAKEAVKYGTENGYDCVLIDTAGRMQNNEPLMRALAKLVSKNEPDLVLFVGEALVGNDGIDQLSMFDRALADYSDRREPHRIDGIVITKFDTIDDKVGAAVS 567

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BLAST of mRNA_H-elongata_contig113103.1066.1 vs. uniprot
Match: H3G7F3_PHYRM (SRP54 domain-containing protein n=23 Tax=Phytophthora TaxID=4783 RepID=H3G7F3_PHYRM)

HSP 1 Score: 158 bits (399), Expect = 4.250e-43
Identity = 75/114 (65.79%), Postives = 97/114 (85.09%), Query Frame = 0

Query:    2 VFGAGYAKDSSSVAREAIKHAEDQGYECVLIDTAGRMQNNEPLMRALSKVINENEPDLVLFVGEALVGNDGVNQLHMFNQVLANNSPMGRLHQIDGIILTKFDTIDTKVCSSIS 115
            +F  GYAKD +SVA+EA+K+  + GY+CVLIDTAGRMQNNEPLMRAL+K+++ NEPDLVLFVGEALVGNDG++QL MF++ LA+ S     H+IDGI++TKFDTID KV +++S
Sbjct:  454 LFQKGYAKDPASVAKEAVKYGTENGYDCVLIDTAGRMQNNEPLMRALAKLVSNNEPDLVLFVGEALVGNDGIDQLAMFDRALADYSDRREPHRIDGIVITKFDTIDDKVGAAVS 567

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BLAST of mRNA_H-elongata_contig113103.1066.1 vs. uniprot
Match: A0A4D9D5H8_9STRA (SRP54 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D5H8_9STRA)

HSP 1 Score: 158 bits (399), Expect = 7.060e-43
Identity = 74/115 (64.35%), Postives = 99/115 (86.09%), Query Frame = 0

Query:    1 NVFGAGYAKDSSSVAREAIKHAEDQGYECVLIDTAGRMQNNEPLMRALSKVINENEPDLVLFVGEALVGNDGVNQLHMFNQVLANNSPMGRLHQIDGIILTKFDTIDTKVCSSIS 115
            +++  GY KD ++VA+ AIK A D+G++ VL+DTAGRMQN EPLMRAL+K++++N+PDLV+FVGEALVGNDG++QL +FNQ LAN SP G+ HQIDGIILTKFDT+D KV +++S
Sbjct:  506 DLYDKGYHKDPAAVAKAAIKEATDKGHDVVLVDTAGRMQNKEPLMRALAKLVSDNQPDLVVFVGEALVGNDGIDQLTVFNQALANYSPPGKTHQIDGIILTKFDTVDEKVGAALS 620

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BLAST of mRNA_H-elongata_contig113103.1066.1 vs. uniprot
Match: K3WPU5_GLOUD (SRP54 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WPU5_GLOUD)

HSP 1 Score: 155 bits (392), Expect = 4.460e-42
Identity = 74/114 (64.91%), Postives = 97/114 (85.09%), Query Frame = 0

Query:    2 VFGAGYAKDSSSVAREAIKHAEDQGYECVLIDTAGRMQNNEPLMRALSKVINENEPDLVLFVGEALVGNDGVNQLHMFNQVLANNSPMGRLHQIDGIILTKFDTIDTKVCSSIS 115
            +F  GYAKD ++VA+EA+K+  D G++CVLIDTAGRMQNNEPLMRAL+K+++ NEPDLVLFVGEALVGNDG++QL MF++ LA+ S     H+IDGI++TKFDTID KV +++S
Sbjct:  459 LFQKGYAKDPAAVAKEAVKYGTDNGFDCVLIDTAGRMQNNEPLMRALAKLVSINEPDLVLFVGEALVGNDGIDQLSMFDRALADYSDRRDPHRIDGIVITKFDTIDDKVGAAVS 572

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BLAST of mRNA_H-elongata_contig113103.1066.1 vs. uniprot
Match: A0A662XUH7_9STRA (SRP54 domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XUH7_9STRA)

HSP 1 Score: 155 bits (391), Expect = 5.950e-42
Identity = 74/108 (68.52%), Postives = 92/108 (85.19%), Query Frame = 0

Query:    2 VFGAGYAKDSSSVAREAIKHAEDQGYECVLIDTAGRMQNNEPLMRALSKVINENEPDLVLFVGEALVGNDGVNQLHMFNQVLANNSPMGRLHQIDGIILTKFDTIDTK 109
            +F  GYAKD +SVA++AIK+  D GY+CVLIDTAGRMQNNEPLMRAL+K+++ NEPDLVLFVGEALVGNDG++QL MF++ LA+ S     H+IDGI++TKFDTID K
Sbjct:  449 LFEKGYAKDPASVAKDAIKYGTDNGYDCVLIDTAGRMQNNEPLMRALAKLVSNNEPDLVLFVGEALVGNDGIDQLAMFDRALADYSDRREPHRIDGIVITKFDTIDDK 556

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BLAST of mRNA_H-elongata_contig113103.1066.1 vs. uniprot
Match: A0A024GCJ8_9STRA (SRP54 domain-containing protein n=9 Tax=Albugo TaxID=65356 RepID=A0A024GCJ8_9STRA)

HSP 1 Score: 154 bits (390), Expect = 7.450e-42
Identity = 73/114 (64.04%), Postives = 96/114 (84.21%), Query Frame = 0

Query:    2 VFGAGYAKDSSSVAREAIKHAEDQGYECVLIDTAGRMQNNEPLMRALSKVINENEPDLVLFVGEALVGNDGVNQLHMFNQVLANNSPMGRLHQIDGIILTKFDTIDTKVCSSIS 115
            +F  GYAK+ ++VA+EAI+HA   G++CVLIDTAGRMQNNEPLMRAL+K+++ N PDL+LFVGEALVGNDG+NQL MF++ LA++S     H IDGI++TKFDTID KV +++S
Sbjct:  445 LFERGYAKNPAAVAQEAIQHATANGFDCVLIDTAGRMQNNEPLMRALAKLVSSNNPDLILFVGEALVGNDGINQLSMFDRALADSSDHQNAHGIDGIVITKFDTIDDKVGAAVS 558

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig113103.1066.1 vs. uniprot

BLAST of mRNA_H-elongata_contig113103.1066.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FQT5_ECTSI	3.390e-56	80.70	SRP101, alpha subunit of the signal recognition pa...	[more]
K8Z840_NANGC	1.060e-44	64.35	Signal recognition particle receptor subunit alpha...	[more]
A0A3M6VSC8_9STRA	5.760e-44	67.54	SRP54 domain-containing protein n=2 Tax=Peronospor...	[more]
A0A7S1U981_9STRA	1.010e-43	64.10	Hypothetical protein n=1 Tax=Phaeomonas parva TaxI...	[more]
A0A0P1B7H3_PLAHL	2.200e-43	65.79	Signal recognition particle receptor subunit alpha...	[more]
H3G7F3_PHYRM	4.250e-43	65.79	SRP54 domain-containing protein n=23 Tax=Phytophth...	[more]
A0A4D9D5H8_9STRA	7.060e-43	64.35	SRP54 domain-containing protein n=2 Tax=Monodopsid...	[more]
K3WPU5_GLOUD	4.460e-42	64.91	SRP54 domain-containing protein n=1 Tax=Globispora...	[more]
A0A662XUH7_9STRA	5.950e-42	68.52	SRP54 domain-containing protein n=2 Tax=Nothophyto...	[more]
A0A024GCJ8_9STRA	7.450e-42	64.04	SRP54 domain-containing protein n=9 Tax=Albugo Tax...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000897	Signal recognition particle, SRP54 subunit, GTPase domain	SMART	SM00962	SRP54_3	coord: 1..122 e-value: 4.5E-8 score: -28.5
IPR000897	Signal recognition particle, SRP54 subunit, GTPase domain	PFAM	PF00448	SRP54	coord: 2..105 e-value: 4.2E-19 score: 68.9
None	No IPR available	GENE3D	3.40.50.300		coord: 1..119 e-value: 3.0E-34 score: 120.3
None	No IPR available	PANTHER	PTHR43134	FAMILY NOT NAMED	coord: 2..118
None	No IPR available	PANTHER	PTHR43134:SF1	SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA	coord: 2..118
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 3..107

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig113103	contig	H-elongata_contig113103:308..1637 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig113103.1066.1	mRNA_H-elongata_contig113103.1066.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig113103 308..1637 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig113103.1066.1 ID=prot_H-elongata_contig113103.1066.1|Name=mRNA_H-elongata_contig113103.1066.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=123bp
NVFGAGYAKDSSSVAREAIKHAEDQGYECVLIDTAGRMQNNEPLMRALSK
VINENEPDLVLFVGEALVGNDGVNQLHMFNQVLANNSPMGRLHQIDGIIL
TKFDTIDTKVCSSISPQHLVVA*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000897	SRP54_GTPase_dom
IPR027417	P-loop_NTPase