prot_H-elongata_contig113100.1065.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig113100.1065.1
Unique Name	prot_H-elongata_contig113100.1065.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	99

Homology

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BLAST of mRNA_H-elongata_contig113100.1065.1 vs. uniprot
Match: A0A6H5KVT7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVT7_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 1.800e-23
Identity = 52/103 (50.49%), Postives = 68/103 (66.02%), Query Frame = 0

Query:    1 VDLADAKPVQSPGGKRYMMIAKDDFSRFARVYSLRRKSEASRYFPDFLQGIS----PAKVDVVRSDRGREFSNGAFSALCRQMRIKQELSPAGSLEFNGVAQR 99
            VDL   K V S GGK Y MI KDDF+R AR+Y LR KS+A   F  FL  +     P+ +++VRSD G +F  G F+++C ++ IKQE +PA S EFNGVA+R
Sbjct:  284 VDLGGKKGVASIGGKHYPMILKDDFTRRARMYFLRSKSDAGSVFRSFLANVRADGIPSLIEIVRSDNGGKFFGGEFASVCNELLIKQEFTPAHSPEFNGVAER 386

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BLAST of mRNA_H-elongata_contig113100.1065.1 vs. uniprot
Match: A0A6H5KKD1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKD1_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 6.870e-18
Identity = 41/85 (48.24%), Postives = 57/85 (67.06%), Query Frame = 0

Query:   19 MIAKDDFSRFARVYSLRRKSEASRYFPDFLQGIS----PAKVDVVRSDRGREFSNGAFSALCRQMRIKQELSPAGSLEFNGVAQR 99
            MI KDDF+R   +Y LR KS+A   F  FL  +     P+ V++VRSD G EF  G F+++C ++ IKQE +PA SL++NGVA+R
Sbjct:    1 MIVKDDFTRRTWMYFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSLQYNGVAER 85

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BLAST of mRNA_H-elongata_contig113100.1065.1 vs. uniprot
Match: A0A438C6Y4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438C6Y4_VITVI)

HSP 1 Score: 75.1 bits (183), Expect = 1.150e-13
Identity = 41/102 (40.20%), Postives = 57/102 (55.88%), Query Frame = 0

Query:    1 VDLADAKPVQSPGGKRYMMIAKDDFSRFARVYSLRRKSEASRYFPDF---LQGISPAKVDVVRSDRGREFSNGAFSALCRQMRIKQELSPAGSLEFNGVAQR 99
            +DL      +S GGK+Y+++  DD+SR+A V  LR KSEA   F D    +Q      ++ +RSDRGREF N  F   C  + IK E S   + + NGV +R
Sbjct:  578 MDLMGPMRTESLGGKKYILVMVDDYSRYAWVAFLRDKSEAFINFKDIGLKIQNEKGHPIERIRSDRGREFDNSNFFEFCHSLGIKHEFSAPRTPQQNGVVER 679

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BLAST of mRNA_H-elongata_contig113100.1065.1 vs. uniprot
Match: A5ATE2_VITVI (Integrase catalytic domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5ATE2_VITVI)

HSP 1 Score: 75.1 bits (183), Expect = 1.150e-13
Identity = 41/102 (40.20%), Postives = 57/102 (55.88%), Query Frame = 0

Query:    1 VDLADAKPVQSPGGKRYMMIAKDDFSRFARVYSLRRKSEASRYFPDF---LQGISPAKVDVVRSDRGREFSNGAFSALCRQMRIKQELSPAGSLEFNGVAQR 99
            +DL      +S GGK+Y+++  DD+SR+A V  LR KSEA   F D    +Q      ++ +RSDRGREF N  F   C  + IK E S   + + NGV +R
Sbjct:  175 MDLMGPMRTESLGGKKYILVMVDDYSRYAWVAFLRDKSEAFINFKDIGLKIQNEKGHPIERIRSDRGREFDNSNFFEFCHSLGIKHEFSXPRTPQQNGVVER 276

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BLAST of mRNA_H-elongata_contig113100.1065.1 vs. uniprot
Match: A0A438EDK4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EDK4_VITVI)

HSP 1 Score: 75.1 bits (183), Expect = 1.160e-13
Identity = 41/102 (40.20%), Postives = 57/102 (55.88%), Query Frame = 0

Query:    1 VDLADAKPVQSPGGKRYMMIAKDDFSRFARVYSLRRKSEASRYFPDF---LQGISPAKVDVVRSDRGREFSNGAFSALCRQMRIKQELSPAGSLEFNGVAQR 99
            +DL      +S GGK+Y+++  DD+SR+A V  LR KSEA   F D    +Q      ++ +RSDRGREF N  F   C  + IK E S   + + NGV +R
Sbjct:  256 MDLMGPMRTESLGGKKYILVMVDDYSRYAWVAFLRDKSEAFINFKDIGLKIQNEKGHPIERIRSDRGREFDNSNFFEFCHSLGIKHEFSAPRTPQQNGVVER 357

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BLAST of mRNA_H-elongata_contig113100.1065.1 vs. uniprot
Match: A0A7N2LKM9_QUELO (Integrase catalytic domain-containing protein n=1 Tax=Quercus lobata TaxID=97700 RepID=A0A7N2LKM9_QUELO)

HSP 1 Score: 73.6 bits (179), Expect = 4.030e-13
Identity = 41/102 (40.20%), Postives = 55/102 (53.92%), Query Frame = 0

Query:    1 VDLADAKPVQSPGGKRYMMIAKDDFSRFARVYSLRRKSEASRYFPDFLQGISPAK---VDVVRSDRGREFSNGAFSALCRQMRIKQELSPAGSLEFNGVAQR 99
            VDL      +S GGKRY+M+  DD+SR+  V  LR KSEA        + +   K   +  VRSD GREF N  F + C +  IK+E S   + + NGV +R
Sbjct:  234 VDLMGPTRTESLGGKRYIMVVVDDYSRYTGVDFLREKSEACERLEILCKKLQNEKGIPIAKVRSDHGREFENARFESFCEKNGIKREFSAPKTPQQNGVVER 335

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BLAST of mRNA_H-elongata_contig113100.1065.1 vs. uniprot
Match: UPI001243F70B (receptor-like protein EIX2 n=1 Tax=Quercus lobata TaxID=97700 RepID=UPI001243F70B)

HSP 1 Score: 73.2 bits (178), Expect = 5.510e-13
Identity = 39/102 (38.24%), Postives = 55/102 (53.92%), Query Frame = 0

Query:    1 VDLADAKPVQSPGGKRYMMIAKDDFSRFARVYSLRRKSEASRYFPDF---LQGISPAKVDVVRSDRGREFSNGAFSALCRQMRIKQELSPAGSLEFNGVAQR 99
            +DL      +S GGKRY+M+  DDF+R+  V  LR KS A ++       LQ     K+D +RSD G+EF N    + C +  I QE S   + + NGV +R
Sbjct:  992 LDLIGPTRTESLGGKRYIMVVVDDFTRYTWVILLRSKSNAPKHIETLCTRLQNEKSLKIDRIRSDHGKEFENSYMESFCTRSGISQEFSTPITPQQNGVLER 1093

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BLAST of mRNA_H-elongata_contig113100.1065.1 vs. uniprot
Match: UPI00137765F5 (DDE-type integrase/transposase/recombinase n=1 Tax=Weizmannia coagulans TaxID=1398 RepID=UPI00137765F5)

HSP 1 Score: 72.4 bits (176), Expect = 1.020e-12
Identity = 39/102 (38.24%), Postives = 55/102 (53.92%), Query Frame = 0

Query:    1 VDLADAKPVQSPGGKRYMMIAKDDFSRFARVYSLRRKSEASRYFPDF---LQGISPAKVDVVRSDRGREFSNGAFSALCRQMRIKQELSPAGSLEFNGVAQR 99
            +DL      +S GGKRY+M+  DDF+R+  V  LR KS+A  +       LQ     K+D +RSD G+EF N    + C +  I QE S   + + NGV +R
Sbjct:  206 LDLMGPTRTESLGGKRYIMVVVDDFTRYTWVILLRSKSDAPEHIEALCTRLQNEKNLKIDRIRSDHGKEFENSYMESFCLKSGISQEFSAPITPQQNGVVER 307

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BLAST of mRNA_H-elongata_contig113100.1065.1 vs. uniprot
Match: A0A2Z6NJ75_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6NJ75_TRISU)

HSP 1 Score: 72.0 bits (175), Expect = 1.410e-12
Identity = 38/92 (41.30%), Postives = 57/92 (61.96%), Query Frame = 0

Query:   11 SPGGKRYMMIAKDDFSRFARVYSLRRKSEASRYFPDFLQGI---SPAKVDVVRSDRGREFSNGAFSALCRQMRIKQELSPAGSLEFNGVAQR 99
            S GGKRY +   DDFSR   VY L+ KSEA   F +F   +   S   + ++R+DRG EF++ AF+  C+   IK++L+ A + + NGV++R
Sbjct:  497 SNGGKRYFLTLTDDFSRKTWVYILKEKSEAFETFRNFKAMVELKSGCVIQMLRTDRGGEFTSNAFNEFCKSKGIKRQLTTAYTPQQNGVSER 588

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BLAST of mRNA_H-elongata_contig113100.1065.1 vs. uniprot
Match: UPI00064DEEDC (uncharacterized protein LOC105967762 n=3 Tax=Erythranthe guttata TaxID=4155 RepID=UPI00064DEEDC)

HSP 1 Score: 71.2 bits (173), Expect = 2.600e-12
Identity = 39/102 (38.24%), Postives = 55/102 (53.92%), Query Frame = 0

Query:    1 VDLADAKPVQSPGGKRYMMIAKDDFSRFARVYSLRRKSEASRYFPDFLQGISPAK---VDVVRSDRGREFSNGAFSALCRQMRIKQELSPAGSLEFNGVAQR 99
            +DL     V+S GGKRY+ +  DDFSRF  V  +R KS++   F    + +S  K   +  +RSD GREF N  F+  C +  I  E S   + + NGV +R
Sbjct:  832 MDLMGPMQVESIGGKRYIFVCVDDFSRFTWVEFIREKSDSFDVFKKLCKKVSFEKQQNIVRIRSDHGREFENSLFTNFCEKYGISHEFSAPKTPQQNGVVER 933

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig113100.1065.1 vs. uniprot

BLAST of mRNA_H-elongata_contig113100.1065.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KVT7_9PHAE	1.800e-23	50.49	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5KKD1_9PHAE	6.870e-18	48.24	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A438C6Y4_VITVI	1.150e-13	40.20	Retrovirus-related Pol polyprotein from transposon...	[more]
A5ATE2_VITVI	1.150e-13	40.20	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A438EDK4_VITVI	1.160e-13	40.20	Retrovirus-related Pol polyprotein from transposon...	[more]
A0A7N2LKM9_QUELO	4.030e-13	40.20	Integrase catalytic domain-containing protein n=1 ...	[more]
UPI001243F70B	5.510e-13	38.24	receptor-like protein EIX2 n=1 Tax=Quercus lobata ...	[more]
UPI00137765F5	1.020e-12	38.24	DDE-type integrase/transposase/recombinase n=1 Tax...	[more]
A0A2Z6NJ75_TRISU	1.410e-12	41.30	Uncharacterized protein n=1 Tax=Trifolium subterra...	[more]
UPI00064DEEDC	2.600e-12	38.24	uncharacterized protein LOC105967762 n=3 Tax=Eryth...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..99 e-value: 5.6E-14 score: 53.8
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 5..97 e-value: 5.9E-11 score: 42.6
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..99 score: 13.463
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 5..99

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig113100	contig	H-elongata_contig113100:1790..2086 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig113100.1065.1	mRNA_H-elongata_contig113100.1065.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig113100 1790..2086 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig113100.1065.1 ID=prot_H-elongata_contig113100.1065.1|Name=mRNA_H-elongata_contig113100.1065.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
VDLADAKPVQSPGGKRYMMIAKDDFSRFARVYSLRRKSEASRYFPDFLQG
ISPAKVDVVRSDRGREFSNGAFSALCRQMRIKQELSPAGSLEFNGVAQR

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036397	RNaseH_sf
IPR001584	Integrase_cat-core
IPR012337	RNaseH-like_sf