prot_H-elongata_contig11281.1047.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig11281.1047.1
Unique Nameprot_H-elongata_contig11281.1047.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length572
Homology
BLAST of mRNA_H-elongata_contig11281.1047.1 vs. uniprot
Match: D7FYL8_ECTSI (Anaphase-promoting complex subunit 4 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL8_ECTSI)

HSP 1 Score: 636 bits (1641), Expect = 2.030e-217
Identity = 361/605 (59.67%), Postives = 430/605 (71.07%), Query Frame = 0
Query:    1 MQYTAFRAVLGRLAVYLPRLPQLWNNTLQPLEKRLSNLEELLPRFGYDGGITPRDELLHLVTCGYASNALAQFLSTNLTEAQVARMRKAIENGTGQVEVMLRGDVSFLARTLLFRACELHRSVVASHVETGAEREDELGPDPAPVEAFLGGCQTLCISVEQTLREVQISRSRLRYLLTWLEQVTPTVTDSTAADGAEDGERNPPSLTLANSVLSILREPLPSEQAS------SASGLPMSRVESMVGVSVPGFSAKEDP-------------------KEPSVVLKDDPTLAAPTIHGQVQHLQASVAEVFKDPRSWLNRAVGIVTCARLCAYSEGGAAELVRTRAAAKAAAXXKAASSDILSLVSMRACICFQDKLPAGCVD------GDSGGFVVAAVAPD-TRRNAGLDMVWIVVVPITV----GASSRTAPRAGDSDQCYESNAVQVVGLRSPAGFQVRQVAFYGSVPGVPTQNEERLAIILEPIADRHRSSVLHLVALNDLIFTPVGTLSSFNEDTETSPARRGRAGG-VKDVTGAARDQGVSTPLLSELSGRSRDLPEHVKGVAMALSGARGMACAVSSSKHLIVFDLEEDEEDKCQAD 568
            MQ+TAFRAV+GRL V +PRLPQLW  TLQ LE +L NLE+LLPRFGYD  IT +DE +HLVTCGYAS ALAQFLST LT  Q+ARMRKA++ GTGQVE MLRGDVS LARTLLFRAC+LHR V+A     G + +  LG   APVEAFL  C+ LC+ VEQTLR+VQ SRSRLR+LL WLEQ++P VTDS +ADG E+ E   P LTLANSVL+ILREPLPS++ S      +A   P SRVESM+G  VPG +  E+P                   K   VVL +DP LA+ T+ GQVQ L ASV EVF+ PR+ L+RAV  VTCARLC  SEGGA +L+RTRAAA+   XX   +     LVSMRAC+ F DKLPAGCVD       +SGG V   V PD TR   GLD+VW+ VVP  +    G++   APR          +++ V G+RSP GFQVRQVAFYGSVPGVPTQNE RLAI+LEP+ADRH+++ LHL+ L++L FT VG+L+SF++    SPAR+ R GG  KDV GAAR QG   P L+ELS RSR+LP H KGVA+ALSGARG+ACAVSSSKHLIVFDLEEDE+   + D
Sbjct:  318 MQFTAFRAVIGRLVVSVPRLPQLWKGTLQALETKLGNLEDLLPRFGYDKDITAKDEFIHLVTCGYASAALAQFLSTGLTHVQLARMRKAVDTGTGQVEAMLRGDVSLLARTLLFRACDLHRLVIACTGGGGVDGDGGLGLGQAPVEAFLKDCEMLCVKVEQTLRDVQTSRSRLRFLLLWLEQMSPVVTDSNSADGTEEHEPPSPCLTLANSVLTILREPLPSDKPSLSSRSTAAGASPRSRVESMIGTRVPGLAVDENPVESLEGPPAARGPLTGPNQKNRFVVLPEDPVLASRTLRGQVQRLGASVEEVFQAPRNRLSRAVANVTCARLCPSSEGGAGDLIRTRAAARXXXXXXXXAPP---LVSMRACMGFHDKLPAGCVDVGERDRRESGGVVAVTVVPDNTRGGKGLDVVWVTVVPTPLPTLEGSNVAVAPR----------DSMWVTGVRSPPGFQVRQVAFYGSVPGVPTQNEGRLAIVLEPVADRHQATALHLLDLDELGFTKVGSLASFDDHGLASPARKARGGGGSKDVIGAARGQGADAPHLTELSSRSRELPAHAKGVAVALSGARGIACAVSSSKHLIVFDLEEDEDGDDEQD 909          
BLAST of mRNA_H-elongata_contig11281.1047.1 vs. uniprot
Match: A0A2R6X3T7_MARPO (Anaphase-promoting complex subunit 4 n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6X3T7_MARPO)

HSP 1 Score: 70.5 bits (171), Expect = 5.620e-9
Identity = 59/234 (25.21%), Postives = 107/234 (45.73%), Query Frame = 0
Query:    1 MQYTAFRAVLGRLAVYLPRLPQLWNNTLQPLEKRLSNLEELLPRFGYDGGITPRDELLHLVTCGYASNALAQFLSTNLTEAQVARMRKAIENGTGQVEVMLRGDVSFLARTLLFRACELHRSVVASHVETGAEREDELGPDPAPVEAFLGGCQTLCISVEQTLREVQISRSRLRYLLTWL--------------EQVTPTVTDSTAADGAE-DGERNPPSLTLANSVLSILREP 219
            +Q ++   ++  L   L  + + W+  +  + ++ +   +LL   G    ++P+DELL L+TCGYAS AL QFL+ ++ E  + R+ K+I+  + ++  +L   +   A  + FR  EL R +   H          +G + + ++  L     L + +E+ LR V  +    R    WL               +  P V     A+  + D E++P  L L+NSV  I+  P
Sbjct:  305 LQASSIEELIDVLQTSLSVMEKQWSEAITAVYEKFNGFTQLLREHG--SNVSPQDELLGLLTCGYASPALHQFLAASVGEGGLKRLAKSIDTASKELYSVLSEHMQPAAEIIAFRLGEL-RGLARWHARLAC-----VGLEESLMDRALEHAGMLLVQLERLLRIVSETTGGFRLFFVWLLKALRQLNRETLSQAETLPNVDSMAVANFLQTDFEKDPIGLHLSNSVNVIVDVP 530          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11281.1047.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FYL8_ECTSI2.030e-21759.67Anaphase-promoting complex subunit 4 n=2 Tax=Ectoc... [more]
A0A2R6X3T7_MARPO5.620e-925.21Anaphase-promoting complex subunit 4 n=2 Tax=March... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024790Anaphase-promoting complex subunit 4 long domainPFAMPF12896ANAPC4coord: 22..186
e-value: 5.4E-14
score: 52.2
IPR024789Anaphase-promoting complex subunit 4PANTHERPTHR13260ANAPHASE PROMOTING COMPLEX SUBUNIT 4 APC4coord: 18..330
coord: 514..564

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11281contigH-elongata_contig11281:1781..5338 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11281.1047.1mRNA_H-elongata_contig11281.1047.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig11281 293..5713 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig11281.1047.1 ID=prot_H-elongata_contig11281.1047.1|Name=mRNA_H-elongata_contig11281.1047.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=572bp
MQYTAFRAVLGRLAVYLPRLPQLWNNTLQPLEKRLSNLEELLPRFGYDGG
ITPRDELLHLVTCGYASNALAQFLSTNLTEAQVARMRKAIENGTGQVEVM
LRGDVSFLARTLLFRACELHRSVVASHVETGAEREDELGPDPAPVEAFLG
GCQTLCISVEQTLREVQISRSRLRYLLTWLEQVTPTVTDSTAADGAEDGE
RNPPSLTLANSVLSILREPLPSEQASSASGLPMSRVESMVGVSVPGFSAK
EDPKEPSVVLKDDPTLAAPTIHGQVQHLQASVAEVFKDPRSWLNRAVGIV
TCARLCAYSEGGAAELVRTRAAAKAAAAAKAASSDILSLVSMRACICFQD
KLPAGCVDGDSGGFVVAAVAPDTRRNAGLDMVWIVVVPITVGASSRTAPR
AGDSDQCYESNAVQVVGLRSPAGFQVRQVAFYGSVPGVPTQNEERLAIIL
EPIADRHRSSVLHLVALNDLIFTPVGTLSSFNEDTETSPARRGRAGGVKD
VTGAARDQGVSTPLLSELSGRSRDLPEHVKGVAMALSGARGMACAVSSSK
HLIVFDLEEDEEDKCQADESY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024790APC4_long_dom
IPR024789APC4