prot_H-elongata_contig112625.1030.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig112625.1030.1
Unique Nameprot_H-elongata_contig112625.1030.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length141
Homology
BLAST of mRNA_H-elongata_contig112625.1030.1 vs. uniprot
Match: A0A2I0W4K7_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0W4K7_9ASPA)

HSP 1 Score: 65.1 bits (157), Expect = 1.480e-9
Identity = 43/129 (33.33%), Postives = 59/129 (45.74%), Query Frame = 0
Query:   17 CQICSRTGHTAQGCKDSGSALIANNAITRPK----ERRGSEFWVIDSGETEHMTQDPAGLEDYTPAPVGDRVESAGGTLLPVAGYGHLRLLVGQGNGNFTDSTRQLTLKYVAHVPNLGQHNLLSTKRLT 141
            CQIC + GH A  C    +   A      P+    +    + W++DSG T H+T D A +    P    D V    G+ L +  YG       QG     ++ R+L L  + HVPNL  HNLLS  +LT
Sbjct:  288 CQICGKIGHIALNCWHRNNYKYAPTIQNVPRALLTQPMPQQSWILDSGATNHITNDSASIHQSAPYNGSDSVTVLNGSSLSIHNYG-------QGLLPLPETPRKLHLFRLLHVPNLT-HNLLSVSKLT 408          
BLAST of mRNA_H-elongata_contig112625.1030.1 vs. uniprot
Match: A0A177TP70_9BASI (Uncharacterized protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177TP70_9BASI)

HSP 1 Score: 57.4 bits (137), Expect = 8.030e-7
Identity = 35/88 (39.77%), Postives = 52/88 (59.09%), Query Frame = 0
Query:   55 WVIDSGETEHMTQDPAGLEDYTPAPVGDRVESAGGTLLPVAGYGHLRLLVGQGNGNFTDSTRQLTLKYVAHVPN-LGQHNLLSTKRLT 141
            +++D+G + H+  DP+ L DY  A     +E A G L+PVAGYG+LR+         T +  ++ LK VAH P+ +G  NL+  KRLT
Sbjct:  751 FILDTGSSRHIVADPSSLTDYRNAAPETGIECANGGLMPVAGYGNLRVT--------TQAGLKIELKDVAHCPSAIG--NLIGGKRLT 828          
BLAST of mRNA_H-elongata_contig112625.1030.1 vs. uniprot
Match: A0A2P6P2V5_ROSCH (Uncharacterized protein n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6P2V5_ROSCH)

HSP 1 Score: 53.5 bits (127), Expect = 2.590e-6
Identity = 33/89 (37.08%), Postives = 47/89 (52.81%), Query Frame = 0
Query:   53 EFWVIDSGETEHMTQDPAGLEDYTPAPVGDRVESAGGTLLPVAGYGHLRLLVGQGNGNFTDSTRQLTLKYVAHVPNLGQHNLLSTKRLT 141
            + W+IDSG T+HMT +P+ +   TP      V +A G   P+ G G + L            T+ +TL  V  VP+L  HNLLS K++T
Sbjct:   21 DMWIIDSGATDHMTNNPSNIHHLTPVRRSG-VTNANGDSYPITGAGSVTL------------TKSITLDTVLLVPSLS-HNLLSVKQIT 95          
BLAST of mRNA_H-elongata_contig112625.1030.1 vs. uniprot
Match: A0A2P6S473_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6S473_ROSCH)

HSP 1 Score: 53.9 bits (128), Expect = 1.260e-5
Identity = 36/106 (33.96%), Postives = 55/106 (51.89%), Query Frame = 0
Query:   36 ALIANNAITRPKERRGSEFWVIDSGETEHMTQDPAGLEDYTPAPVGDRVESAGGTLLPVAGYGHLRLLVGQGNGNFTDSTRQLTLKYVAHVPNLGQHNLLSTKRLT 141
            +L+++N+    K+      W+IDSG T+HMT +P+ +   TP      V +A G   P+ G G + L            T+ +TL  V  VP+L  HNLLS K++T
Sbjct:  224 SLLSSNSAFNWKD-----MWIIDSGATDHMTNNPSNIHHLTPVRRSG-VTNANGDSYPITGAGSVTL------------TKSITLDTVLLVPSLS-HNLLSVKQIT 310          
BLAST of mRNA_H-elongata_contig112625.1030.1 vs. uniprot
Match: A0A2N9EP24_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EP24_FAGSY)

HSP 1 Score: 53.5 bits (127), Expect = 1.680e-5
Identity = 39/130 (30.00%), Postives = 56/130 (43.08%), Query Frame = 0
Query:   17 CQICSRTGHTAQGC----------KDSGSALIANNAITRPKERRGSEFWVIDSGETEHMTQDPAGLEDYTPAPVGDRVESAGGTLLPVAGYGHLRLLVGQGNGNFTDSTRQLTLKYVAHVPNLGQHNLLS 136
            CQIC + GHTA  C          +   S L A  + T       S +W+ D+G T+H T D A ++  T     D +    G +LP+   GH +L           S     L++   VPN+ + NLLS
Sbjct:  317 CQICYKMGHTAIDCYHRMDFTYQGRHPPSKLAAMASSTH---NLSSNYWISDTGATDHFTPDLANIQHPTEYTGTDTITVGNGNILPITHIGHAQLRA---------SKYLFALRHTLRVPNM-KSNLLS 433          
BLAST of mRNA_H-elongata_contig112625.1030.1 vs. uniprot
Match: UPI00098A0368 (uncharacterized protein LOC109763407 n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=UPI00098A0368)

HSP 1 Score: 53.1 bits (126), Expect = 1.880e-5
Identity = 39/133 (29.32%), Postives = 60/133 (45.11%), Query Frame = 0
Query:   11 SNPPRRCQICSRTGHTAQGC---KDSGSALIANNAITRPKERRGSEFWVIDSGETEHMTQDPAGLEDYTPAPVGDRVESAGGTLLPVAGYGHLRLLVGQGNGNFTDSTRQLTLKYVAHVPNLGQHNLLSTKRL 140
            S+P  RCQ+C ++GH    C    D      A +     +E+     W +DSG T+H+T +   L         D++ +A    + +    H    +GQ + N ++  R L L+ V HVP  G  NL S  RL
Sbjct:  201 SHPRPRCQLCKKSGHEVMDCWHHYDENYVPDALHVAAAMREQGEDGVWYVDSGTTDHVTNELEQLALRERYHAADQIHTASRGGMDIC---H----IGQASINSSNLKRGLVLRDVLHVPQ-GDKNLASMSRL 325          
BLAST of mRNA_H-elongata_contig112625.1030.1 vs. uniprot
Match: A0A540MJW7_MALBA (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540MJW7_MALBA)

HSP 1 Score: 52.4 bits (124), Expect = 4.260e-5
Identity = 39/110 (35.45%), Postives = 53/110 (48.18%), Query Frame = 0
Query:   32 DSGSALIANNAITRPKERRGSEFWVIDSGETEHMTQDPAGLEDYTPAPVGDRVESAGGTLLPVAGYGHLRLLVGQGNGNFTDSTRQLTLKYVAHVPNLGQHNLLSTKRLT 141
            D+G+   A N    P  +     W+IDSG ++HMT +      +T  P+ + V+ A G   PV G G + L  G            L+L  V HVPNL  HNLLS  +LT
Sbjct:  326 DAGNFGFALNTTIVPPNKP----WIIDSGASDHMTNNSTWFVSHTTPPL-NTVKVANGISTPVLGAGSISLTPG------------LSLSSVLHVPNLS-HNLLSIGKLT 417          
BLAST of mRNA_H-elongata_contig112625.1030.1 vs. uniprot
Match: A0A540NTL9_MALBA (Integrase catalytic domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540NTL9_MALBA)

HSP 1 Score: 52.4 bits (124), Expect = 4.350e-5
Identity = 39/110 (35.45%), Postives = 53/110 (48.18%), Query Frame = 0
Query:   32 DSGSALIANNAITRPKERRGSEFWVIDSGETEHMTQDPAGLEDYTPAPVGDRVESAGGTLLPVAGYGHLRLLVGQGNGNFTDSTRQLTLKYVAHVPNLGQHNLLSTKRLT 141
            D+G+   A N    P  +     W+IDSG ++HMT +      +T  P+ + V+ A G   PV G G + L  G            L+L  V HVPNL  HNLLS  +LT
Sbjct:  324 DAGNFGFALNTTIVPPNKP----WIIDSGASDHMTNNSTWFVSHTTPPL-NTVKVANGISTPVLGAGSISLTPG------------LSLSSVLHVPNLS-HNLLSIGKLT 415          
BLAST of mRNA_H-elongata_contig112625.1030.1 vs. uniprot
Match: A0A540MDT6_MALBA (Uncharacterized protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540MDT6_MALBA)

HSP 1 Score: 52.0 bits (123), Expect = 5.210e-5
Identity = 39/106 (36.79%), Postives = 48/106 (45.28%), Query Frame = 0
Query:   36 ALIANNAITRPKERRG-SEFWVIDSGETEHMTQDPAGLEDYTPAPVGDRVESAGGTLLPVAGYGHLRLLVGQGNGNFTDSTRQLTLKYVAHVPNLGQHNLLSTKRL 140
            A +A  A + P      SE+W++DSG T HMT D + L    P    D V  A G  L +A  G   L +          T  L L  V HVP L QH LLS  +L
Sbjct:  356 APVAMTARSTPSSSAPQSEYWLLDSGATHHMTSDLSNLHVAAPYSSSDTVTGANGAGLQIAHIGQSTLSL---------PTNNLCLTSVLHVPQLSQH-LLSMHQL 451          
BLAST of mRNA_H-elongata_contig112625.1030.1 vs. uniprot
Match: A0A540NFL3_MALBA (Integrase catalytic domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540NFL3_MALBA)

HSP 1 Score: 51.6 bits (122), Expect = 7.770e-5
Identity = 38/106 (35.85%), Postives = 48/106 (45.28%), Query Frame = 0
Query:   36 ALIANNAITRPKERRG-SEFWVIDSGETEHMTQDPAGLEDYTPAPVGDRVESAGGTLLPVAGYGHLRLLVGQGNGNFTDSTRQLTLKYVAHVPNLGQHNLLSTKRL 140
            A +A  A + P      SE+W++DSG T HMT D + L    P    D +  A G  L +A  G   L +          T  L L  V HVP L QH LLS  +L
Sbjct:    8 APVAMTARSTPSSSAPQSEYWLLDSGATHHMTSDLSNLHVAVPYSSSDTITGANGAGLQIAHIGQSTLSL---------PTNNLCLTSVLHVPQLSQH-LLSMHQL 103          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112625.1030.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A2I0W4K7_9ASPA1.480e-933.33Retrovirus-related Pol polyprotein from transposon... [more]
A0A177TP70_9BASI8.030e-739.77Uncharacterized protein n=1 Tax=Tilletia indica Ta... [more]
A0A2P6P2V5_ROSCH2.590e-637.08Uncharacterized protein n=1 Tax=Rosa chinensis Tax... [more]
A0A2P6S473_ROSCH1.260e-533.96Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A2N9EP24_FAGSY1.680e-530.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI00098A03681.880e-529.32uncharacterized protein LOC109763407 n=1 Tax=Aegil... [more]
A0A540MJW7_MALBA4.260e-535.45Integrase catalytic domain-containing protein (Fra... [more]
A0A540NTL9_MALBA4.350e-535.45Integrase catalytic domain-containing protein n=1 ... [more]
A0A540MDT6_MALBA5.210e-536.79Uncharacterized protein n=1 Tax=Malus baccata TaxI... [more]
A0A540NFL3_MALBA7.770e-535.85Integrase catalytic domain-containing protein n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 5..33

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig112625contigH-elongata_contig112625:168..887 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig112625.1030.1mRNA_H-elongata_contig112625.1030.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig112625 168..887 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig112625.1030.1 ID=prot_H-elongata_contig112625.1030.1|Name=mRNA_H-elongata_contig112625.1030.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=141bp
MFAGRGNGHGSNPPRRCQICSRTGHTAQGCKDSGSALIANNAITRPKERR
GSEFWVIDSGETEHMTQDPAGLEDYTPAPVGDRVESAGGTLLPVAGYGHL
RLLVGQGNGNFTDSTRQLTLKYVAHVPNLGQHNLLSTKRLT
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036875Znf_CCHC_sf