prot_H-elongata_contig112607.1028.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig112607.1028.1
Unique Name	prot_H-elongata_contig112607.1028.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	183

Homology

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BLAST of mRNA_H-elongata_contig112607.1028.1 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE)

HSP 1 Score: 329 bits (844), Expect = 3.220e-105
Identity = 156/183 (85.25%), Postives = 168/183 (91.80%), Query Frame = 0

Query:    1 SGSDVKAVSINCLWPLYGVLWCWCVFHLMAKAAEQAFGIHLDPAKSKNPAARDLLRKAVKVVENLNKSPNFKAKFEDLQVDLLGEVFKIVEHAPQRWLSLTRTLERIIRLWHVLRKLYSDECNNFPLEEGDNKNAILHLYSLLQPLSSITRDGQYGGAPMMADIFMKFGKLNIEMLDPSKDLK 183
            SGSDVKAVS NCLWP+Y VLWCWC  HLM KAAEQA+GIHLDPAKSKNP ARD+L+K VKVVENLNKSPNFKAKFEDLQVD+LGE+FK+V+HAPQRWLSLTRT+ER IRLWHVLRKLYSDE  NFPLEEGD K+AIL LYSLLQPLSSITRDGQYG APMMADIFMKFG LN ++LDPSKDLK
Sbjct:  338 SGSDVKAVSTNCLWPMYAVLWCWCFCHLMVKAAEQAYGIHLDPAKSKNPQARDILKKVVKVVENLNKSPNFKAKFEDLQVDMLGEIFKMVKHAPQRWLSLTRTVERTIRLWHVLRKLYSDEGRNFPLEEGDTKDAILQLYSLLQPLSSITRDGQYGDAPMMADIFMKFGMLNTDVLDPSKDLK 520

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BLAST of mRNA_H-elongata_contig112607.1028.1 vs. uniprot
Match: A0A6H5KEE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEE6_9PHAE)

HSP 1 Score: 277 bits (709), Expect = 6.030e-89
Identity = 132/183 (72.13%), Postives = 150/183 (81.97%), Query Frame = 0

Query:    1 SGSDVKAVSINCLWPLYGVLWCWCVFHLMAKAAEQAFGIHLDPAKSKNPAARDLLRKAVKVVENLNKSPNFKAKFEDLQVDLLGEVFKIVEHAPQRWLSLTRTLERIIRLWHVLRKLYSDECNNFPLEEGDNKNAILHLYSLLQPLSSITRDGQYGGAPMMADIFMKFGKLNIEMLDPSKDLK 183
            SGSDVK+ S+N L+P YGVLW WC  HLM KAAE  FG H+DP KSKNP ARD+L+  + +V  LN+S NFKAKFEDLQVDLLG+V KI   APQRWL+  RTLER+IRLWHVLRKLYSD   NFPLEEGDNKNAIL L+SLLQ LSS+TRDGQYG APM AD+FMKFG+L +E+LDPSK LK
Sbjct:   54 SGSDVKSASVNGLYPQYGVLWNWCFCHLMVKAAEDGFGTHVDPQKSKNPEARDMLKNVISMVGTLNRSSNFKAKFEDLQVDLLGDVLKIPNQAPQRWLTQVRTLERVIRLWHVLRKLYSDAGKNFPLEEGDNKNAILQLFSLLQSLSSVTRDGQYGNAPMQADVFMKFGELKMEVLDPSKPLK 236

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BLAST of mRNA_H-elongata_contig112607.1028.1 vs. uniprot
Match: A0A6H5L8D8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D8_9PHAE)

HSP 1 Score: 266 bits (680), Expect = 1.840e-86
Identity = 127/183 (69.40%), Postives = 149/183 (81.42%), Query Frame = 0

Query:    1 SGSDVKAVSINCLWPLYGVLWCWCVFHLMAKAAEQAFGIHLDPAKSKNPAARDLLRKAVKVVENLNKSPNFKAKFEDLQVDLLGEVFKIVEHAPQRWLSLTRTLERIIRLWHVLRKLYSDECNNFPLEEGDNKNAILHLYSLLQPLSSITRDGQYGGAPMMADIFMKFGKLNIEMLDPSKDLK 183
            SGSDVK+VS N L P +GVLW WC  HLM KAAE  FG H+DP KSKNP ARD+L+K + +V  L++S NFKAKF+DLQVD+LGEV KI   AP+RWL+L RTLER+IRLWHVLRKLYSD    FPLEEGDNK+ IL LYSLLQP SS+TRDGQYGGAPM+ADI+MK G L + +LDPS++LK
Sbjct:  105 SGSDVKSVSFNGLHPQFGVLWNWCFCHLMVKAAEDGFGTHVDPQKSKNPEARDMLKKLINLVGTLHRSSNFKAKFDDLQVDVLGEVLKIPNQAPKRWLTLVRTLERVIRLWHVLRKLYSDTGKTFPLEEGDNKDCILQLYSLLQPPSSVTRDGQYGGAPMLADIYMKCGMLKMRVLDPSEELK 287

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BLAST of mRNA_H-elongata_contig112607.1028.1 vs. uniprot
Match: A0A6H5KS21_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS21_9PHAE)

HSP 1 Score: 254 bits (649), Expect = 1.290e-80
Identity = 122/171 (71.35%), Postives = 137/171 (80.12%), Query Frame = 0

Query:    1 SGSDVKAVSINCLWPLYGVLWCWCVFHLMAKAAEQAFGIHLDPAKSKNPAARDLLRKAVKVVENLNKSPNFKAKFEDLQVDLLGEVFKIVEHAPQRWLSLTRTLERIIRLWHVLRKLYSDECNNFPLEEGDNKNAILHLYSLLQPLSSITRDGQYGGAPMMADIFMKFGKL 171
            SGSDVK+VS+N L P YGVLW WC  HLM KAAE AFG H DP KSKNP  R +L+  + +V  L+KSPN  AKFED+QVDLLGE+ KI   APQRWL+L RTLER+IRLWHVLRKL+SD    FPLEEGDNK+ IL LYSLLQPLSS+TRDGQYGG PMMADI+MKFG L
Sbjct:  251 SGSDVKSVSVNGLHPKYGVLWNWCCCHLMVKAAEDAFGTHPDPQKSKNPEGRKMLKNVIGMVGTLHKSPNLTAKFEDVQVDLLGEILKIPNQAPQRWLTLVRTLERVIRLWHVLRKLHSDAGKTFPLEEGDNKDCILQLYSLLQPLSSVTRDGQYGGVPMMADIYMKFGML 421

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BLAST of mRNA_H-elongata_contig112607.1028.1 vs. uniprot
Match: A0A6H5JB08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB08_9PHAE)

HSP 1 Score: 251 bits (642), Expect = 1.570e-77
Identity = 124/183 (67.76%), Postives = 143/183 (78.14%), Query Frame = 0

Query:    1 SGSDVKAVSINCLWPLYGVLWCWCVFHLMAKAAEQAFGIHLDPAKSKNPAARDLLRKAVKVVENLNKSPNFKAKFEDLQVDLLGEVFKIVEHAPQRWLSLTRTLERIIRLWHVLRKLYSDECNNFPLEEGDNKNAILHLYSLLQPLSSITRDGQYGGAPMMADIFMKFGKLNIEMLDPSKDLK 183
            SGSDVK+VS+N L P YGVLW WC  HLM KAAE AFG H DP KSKNP A ++L+  + +V  L+KS N  AKFEDLQVDLLGEV KI   APQRWL+L RT+ER+IRLWHVLRKLYSD   NF LEEGDNK+ I  LYSLLQ LSS+TRDGQYGG PM+ADI++KFG L + +L+ S DLK
Sbjct:   94 SGSDVKSVSVNGLHPKYGVLWNWCYCHLMIKAAEDAFGTHPDPQKSKNPEAHNMLKNLIGIVGTLHKSLNLTAKFEDLQVDLLGEVLKIPNQAPQRWLTLVRTMERVIRLWHVLRKLYSDAGKNFILEEGDNKDCIPQLYSLLQSLSSVTRDGQYGGLPMLADIYIKFGMLKMGVLNSSADLK 276

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BLAST of mRNA_H-elongata_contig112607.1028.1 vs. uniprot
Match: A0A6H5JZ66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ66_9PHAE)

HSP 1 Score: 247 bits (631), Expect = 2.300e-77
Identity = 122/183 (66.67%), Postives = 142/183 (77.60%), Query Frame = 0

Query:    1 SGSDVKAVSINCLWPLYGVLWCWCVFHLMAKAAEQAFGIHLDPAKSKNPAARDLLRKAVKVVENLNKSPNFKAKFEDLQVDLLGEVFKIVEHAPQRWLSLTRTLERIIRLWHVLRKLYSDECNNFPLEEGDNKNAILHLYSLLQPLSSITRDGQYGGAPMMADIFMKFGKLNIEMLDPSKDLK 183
            SGSDVK+VS+N L P YGVLW WC  HLM KAAE AFG   DP  SKNP AR++L+  + ++  L+KS N  AKFEDLQVDLLGEV  I   APQRWL+L RT+ER+IRLW V+RKLYSD   NFPLEEGDNK+ I  LYSLLQPLSS+TRDGQYGG PM+ADI+MKFG L + +L+ S DLK
Sbjct:   86 SGSDVKSVSVNGLHPKYGVLWNWCYCHLMVKAAEDAFGTRPDPQMSKNPEARNMLKNLIGIIGTLHKS-NLTAKFEDLQVDLLGEVLNIPNQAPQRWLTLVRTMERVIRLWRVMRKLYSDAGKNFPLEEGDNKDCINQLYSLLQPLSSVTRDGQYGGLPMLADIYMKFGMLKMGVLNSSADLK 267

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BLAST of mRNA_H-elongata_contig112607.1028.1 vs. uniprot
Match: A0A6H5K0P1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0P1_9PHAE)

HSP 1 Score: 247 bits (631), Expect = 1.610e-75
Identity = 122/183 (66.67%), Postives = 142/183 (77.60%), Query Frame = 0

Query:    1 SGSDVKAVSINCLWPLYGVLWCWCVFHLMAKAAEQAFGIHLDPAKSKNPAARDLLRKAVKVVENLNKSPNFKAKFEDLQVDLLGEVFKIVEHAPQRWLSLTRTLERIIRLWHVLRKLYSDECNNFPLEEGDNKNAILHLYSLLQPLSSITRDGQYGGAPMMADIFMKFGKLNIEMLDPSKDLK 183
            SGSDVK+VS+N L P YGVLW WC  HLM KAAE AFG   DP  SKNP AR++L+  + ++  L+KS N  AKFEDLQVDLLGEV  I   APQRWL+L RT+ER+IRLW V+RKLYSD   NFPLEEGDNK+ I  LYSLLQPLSS+TRDGQYGG PM+ADI+MKFG L + +L+ S DLK
Sbjct:  215 SGSDVKSVSVNGLHPKYGVLWNWCYCHLMVKAAEDAFGTRPDPQMSKNPEARNMLKNLIGIIGTLHKS-NLTAKFEDLQVDLLGEVLNIPNQAPQRWLTLVRTMERVIRLWRVMRKLYSDAGKNFPLEEGDNKDCINQLYSLLQPLSSVTRDGQYGGLPMLADIYMKFGMLKMGVLNSSADLK 396

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BLAST of mRNA_H-elongata_contig112607.1028.1 vs. uniprot
Match: A0A6H5JTT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT2_9PHAE)

HSP 1 Score: 224 bits (571), Expect = 1.240e-69
Identity = 115/183 (62.84%), Postives = 135/183 (73.77%), Query Frame = 0

Query:    1 SGSDVKAVSINCLWPLYGVLWCWCVFHLMAKAAEQAFGIHLDPAKSKNPAARDLLRKAVKVVENLNKSPNFKAKFEDLQVDLLGEVFKIVEHAPQRWLSLTRTLERIIRLWHVLRKLYSDECNNFPLEEGDNKNAILHLYSLLQPLSSITRDGQYGGAPMMADIFMKFGKLNIEMLDPSKDLK 183
            SG DVK+VS+N L P +GVLW  C +HLM KAAE  FG H+DP KSKNP ARD+L+K + +V  L++S NFKAKF DLQVD+ GEVF     APQRWL+L  TLER+IRLWHVLRKLYSD    FPLEEGD  + IL L SLLQPLSS+TRDGQYGGAPM          L + +LDPS++LK
Sbjct:   62 SGLDVKSVSVNGLHPQFGVLWNCCFYHLMVKAAEDGFGTHVDPQKSKNPKARDMLKKLINLVGTLHRSSNFKAKFGDLQVDVWGEVFP--NQAPQRWLTLVPTLERVIRLWHVLRKLYSDTGKTFPLEEGDITDCILQLNSLLQPLSSVTRDGQYGGAPM----------LKMRVLDPSEELK 232

[Close]

BLAST of mRNA_H-elongata_contig112607.1028.1 vs. uniprot
Match: A0A6H5KFQ8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFQ8_9PHAE)

HSP 1 Score: 224 bits (572), Expect = 4.180e-68
Identity = 106/148 (71.62%), Postives = 124/148 (83.78%), Query Frame = 0

Query:   36 AFGIHLDPAKSKNPAARDLLRKAVKVVENLNKSPNFKAKFEDLQVDLLGEVFKIVEHAPQRWLSLTRTLERIIRLWHVLRKLYSDECNNFPLEEGDNKNAILHLYSLLQPLSSITRDGQYGGAPMMADIFMKFGKLNIEMLDPSKDLK 183
            AFG+H DP KSKNP ARD+++  +KVVENLNKS N +AKFEDL+ +LLGEV K+V+HAPQRWLS+ RT+ERIIRLWH LRKLYSDE   FPLEEGDNKN +L LYSLL+PL  ITRDGQYGGAPMMADI+MK G L + ML+  K+LK
Sbjct:   28 AFGVHPDPTKSKNPGARDVIKVVIKVVENLNKSSNLRAKFEDLETELLGEVLKVVKHAPQRWLSMVRTMERIIRLWHALRKLYSDEGKVFPLEEGDNKNGVLQLYSLLEPLCMITRDGQYGGAPMMADIYMKMGILKMGMLNLEKELK 175

[Close]

BLAST of mRNA_H-elongata_contig112607.1028.1 vs. uniprot
Match: A0A6H5K8W6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W6_9PHAE)

HSP 1 Score: 204 bits (519), Expect = 2.970e-60
Identity = 113/183 (61.75%), Postives = 122/183 (66.67%), Query Frame = 0

Query:    1 SGSDVKAVSINCLWPLYGVLWCWCVFHLMAKAAEQAFGIHLDPAKSKNPAARDLLRKAVKVVENLNKSPNFKAKFEDLQVDLLGEVFKIVEHAPQRWLSLTRTLERIIRLWHVLRKLYSDECNNFPLEEGDNKNAILHLYSLLQPLSSITRDGQYGGAPMMADIFMKFGKLNIEMLDPSKDLK 183
            SGSDVKAVSIN LW  +GVLW WC  HLM KAAEQ F   LD  KSKNPAARDLL+  +KVVE LNKS N  AKFEDLQVDLLGEVFK+V+HAPQRWL LTRTLERIIRLWH                                PLSSITRD QYGGAPM A+IFMKF  L   +LD S+ L+
Sbjct:   49 SGSDVKAVSINGLWKHFGVLWNWCFCHLM-KAAEQPFCTSLDTVKSKNPAARDLLKTVIKVVETLNKSSNLGAKFEDLQVDLLGEVFKVVKHAPQRWLGLTRTLERIIRLWH--------------------------------PLSSITRDVQYGGAPMTAEIFMKFATLKTNVLDMSEPLR 198

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig112607.1028.1 vs. uniprot

BLAST of mRNA_H-elongata_contig112607.1028.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 22


Match Name	E-value	Identity	Description
A0A6H5JJJ9_9PHAE	3.220e-105	85.25	Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec...	[more]
A0A6H5KEE6_9PHAE	6.030e-89	72.13	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L8D8_9PHAE	1.840e-86	69.40	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KS21_9PHAE	1.290e-80	71.35	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5JB08_9PHAE	1.570e-77	67.76	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JZ66_9PHAE	2.300e-77	66.67	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K0P1_9PHAE	1.610e-75	66.67	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JTT2_9PHAE	1.240e-69	62.84	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KFQ8_9PHAE	4.180e-68	71.62	Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec...	[more]
A0A6H5K8W6_9PHAE	2.970e-60	61.75	Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 10..171
None	No IPR available	TMHMM	TMhelix		coord: 7..29

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig112607	contig	H-elongata_contig112607:353..901 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig112607.1028.1	mRNA_H-elongata_contig112607.1028.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig112607 353..901 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig112607.1028.1 ID=prot_H-elongata_contig112607.1028.1|Name=mRNA_H-elongata_contig112607.1028.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=183bp
SGSDVKAVSINCLWPLYGVLWCWCVFHLMAKAAEQAFGIHLDPAKSKNPA
ARDLLRKAVKVVENLNKSPNFKAKFEDLQVDLLGEVFKIVEHAPQRWLSL
TRTLERIIRLWHVLRKLYSDECNNFPLEEGDNKNAILHLYSLLQPLSSIT
RDGQYGGAPMMADIFMKFGKLNIEMLDPSKDLK

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012337	RNaseH-like_sf