prot_H-elongata_contig112585.1025.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig112585.1025.1
Unique Nameprot_H-elongata_contig112585.1025.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length173
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112585.1025.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 37..57
e-value: 25.0
score: 2.6
coord: 4..20
e-value: 2.0E-5
score: 34.1
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 3..19
e-value: 5.2E-7
score: 29.4
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 5..19
score: 11.12
NoneNo IPR availableGENE3D4.10.60.10coord: 1..53
e-value: 1.4E-8
score: 36.5
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 4..25

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig112585contigH-elongata_contig112585:655..1173 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig112585.1025.1mRNA_H-elongata_contig112585.1025.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig112585 655..1173 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig112585.1025.1 ID=prot_H-elongata_contig112585.1025.1|Name=mRNA_H-elongata_contig112585.1025.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=173bp
STRQCFNCGKRGHYARDCRASEESGATDNRKVGGSCMCYICGSEKHLAYK
HCGLCKSLEHRTQNCKERGAEKGKMLEKLTVPAVPEVGTIAVIVGAACGG
RKDGWESDSGATFHMSHTRTGMSAYKKASPGMTVKIADGNTLPMDGFGRI
EMDVDHPGHTTKRLKMDDVAYVP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf