prot_H-elongata_contig11240.1009.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig11240.1009.1
Unique Name	prot_H-elongata_contig11240.1009.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	289

Homology

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BLAST of mRNA_H-elongata_contig11240.1009.1 vs. uniprot
Match: D8LAU9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAU9_ECTSI)

HSP 1 Score: 158 bits (400), Expect = 3.390e-43
Identity = 110/254 (43.31%), Postives = 134/254 (52.76%), Query Frame = 0

Query:   43 WLS----ALEGTRRRRLGPHRFSWMLGSAGDANGGENRLPREGNGDNDDEASENADI-------------VDEETTDGRDAATSTPVDARQEEPQRLAEEGDADPRRPPGSDDWDAAWASTKRKMEEDRKRAPAFSGRKQVVATKNADGEYDFVEISADGSRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVVDLATTNQAFAAVFALLAAAFIFEVYVYATGGITNGATRFQGVGQPTTYDGIPLPPAPP 279
            WLS    A+  T   R  PHR    L  +GD N   +  P  GN D+  EA E+                 DE+ T     A +T     Q E +  A    A+  +     DWD AWAST+++ME +++ APAFSGRKQVVATKN DG YDF EISADGS R                              E V+ ATTNQAFA +FA+L A+ IFEVYVY +GGITNG+TRFQ +GQPTTYD +PLP  PP
Sbjct:   39 WLSSPPRAISRTSSSRRRPHRPYASLFDSGDENNARDDSPNPGNADSQGEAPESESAPSSPDGGAKPVPRADEQLTGSLADAGATGEGPPQAEGEAAAAGEGAEEEQV----DWDKAWASTRQRMEREKRAAPAFSGRKQVVATKNEDGGYDFEEISADGSSRMRGDKGRGGFGFADSNQVEDGPGGIRRKEQEAVNFATTNQAFAGLFAILLASLIFEVYVYMSGGITNGSTRFQDMGQPTTYDALPLPATPP 288

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig11240.1009.1 vs. uniprot

BLAST of mRNA_H-elongata_contig11240.1009.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D8LAU9_ECTSI	3.390e-43	43.31	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 250..288
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..228
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 229..249
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..23 score: 5.0
None	No IPR available	TMHMM	TMhelix		coord: 229..251

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig11240	contig	H-elongata_contig11240:5881..7936 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig11240.1009.1	mRNA_H-elongata_contig11240.1009.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig11240 4838..7949 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig11240.1009.1 ID=prot_H-elongata_contig11240.1009.1|Name=mRNA_H-elongata_contig11240.1009.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=289bp
MRALVGHADSPAGFQATAFALACAKLAPSSRAPYPPFAAPRAWLSALEGT
RRRRLGPHRFSWMLGSAGDANGGENRLPREGNGDNDDEASENADIVDEET
TDGRDAATSTPVDARQEEPQRLAEEGDADPRRPPGSDDWDAAWASTKRKM
EEDRKRAPAFSGRKQVVATKNADGEYDFVEISADGSRRRRGDGGGGFEFS
PGGPGDADASGRFRDREREVVDLATTNQAFAAVFALLAAAFIFEVYVYAT
GGITNGATRFQGVGQPTTYDGIPLPPAPPPSPQEDLSV*