prot_H-elongata_contig112272.998.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig112272.998.1
Unique Name	prot_H-elongata_contig112272.998.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	121

Homology

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BLAST of mRNA_H-elongata_contig112272.998.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 4.800e-29
Identity = 59/120 (49.17%), Postives = 80/120 (66.67%), Query Frame = 0

Query:    3 LYSFVLDLSADGYGSKEIAMNA--VANDQVWHRRLGHLHAQSLDILRKRYGTGITFEGGVSDCGVCAVGKAQQLAHPKTANHNVNRSFQLCYGDLMGPFTPVAIGGYKYISKITDKYTKW 120
            LY F +DL   G    EI+  A  V +  +WHRR+GH+H +SLDILRK  G G+ + G +S C VCAVG ++Q  HPK A+++ +R FQL   DLMGPF+P A+GG+ YI K  D++ KW
Sbjct:  243 LYHFTMDLPETG----EISGVALPVKSAALWHRRVGHVHGRSLDILRKVQGNGVEYNGELSACDVCAVGNSKQQNHPKRASYDASRPFQLVTTDLMGPFSPPALGGFLYIKKFVDQHIKW 358

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BLAST of mRNA_H-elongata_contig112272.998.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 6.280e-27
Identity = 49/96 (51.04%), Postives = 67/96 (69.79%), Query Frame = 0

Query:   25 VANDQVWHRRLGHLHAQSLDILRKRYGTGITFEGGVSDCGVCAVGKAQQLAHPKTANHNVNRSFQLCYGDLMGPFTPVAIGGYKYISKITDKYTKW 120
            V +  +WHRR+GH++++SLDILRK    G+     V DCG CA+GK+ Q  HPK A ++V R FQL + D +GPFTP A+GG+KY +K  D+ TKW
Sbjct:  523 VESANLWHRRMGHINSKSLDILRKAPNNGVDHTEDVKDCGPCALGKSTQQPHPKEATYDVKRPFQLVFVDTLGPFTPTALGGFKYATKFVDQQTKW 618

[Close]

BLAST of mRNA_H-elongata_contig112272.998.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 4.000e-26
Identity = 46/96 (47.92%), Postives = 67/96 (69.79%), Query Frame = 0

Query:   25 VANDQVWHRRLGHLHAQSLDILRKRYGTGITFEGGVSDCGVCAVGKAQQLAHPKTANHNVNRSFQLCYGDLMGPFTPVAIGGYKYISKITDKYTKW 120
            V    +WHRR+GH++ +SLD+LR++  +GI + G V DC  C +GK+ Q  HPK A + V+  FQL + D +GPFTP A+GG+KY +K  D++TKW
Sbjct:   41 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKW 136

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BLAST of mRNA_H-elongata_contig112272.998.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 4.040e-26
Identity = 46/96 (47.92%), Postives = 67/96 (69.79%), Query Frame = 0

Query:   25 VANDQVWHRRLGHLHAQSLDILRKRYGTGITFEGGVSDCGVCAVGKAQQLAHPKTANHNVNRSFQLCYGDLMGPFTPVAIGGYKYISKITDKYTKW 120
            V    +WHRR+GH++ +SLD+LR++  +GI + G V DC  C +GK+ Q  HPK A + V+  FQL + D +GPFTP A+GG+KY +K  D++TKW
Sbjct:  570 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKW 665

[Close]

BLAST of mRNA_H-elongata_contig112272.998.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 4.110e-26
Identity = 46/96 (47.92%), Postives = 67/96 (69.79%), Query Frame = 0

Query:   25 VANDQVWHRRLGHLHAQSLDILRKRYGTGITFEGGVSDCGVCAVGKAQQLAHPKTANHNVNRSFQLCYGDLMGPFTPVAIGGYKYISKITDKYTKW 120
            V    +WHRR+GH++ +SLD+LR++  +GI + G V DC  C +GK+ Q  HPK A + V+  FQL + D +GPFTP A+GG+KY +K  D++TKW
Sbjct:  692 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKW 787

[Close]

BLAST of mRNA_H-elongata_contig112272.998.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 4.120e-26
Identity = 46/96 (47.92%), Postives = 67/96 (69.79%), Query Frame = 0

Query:   25 VANDQVWHRRLGHLHAQSLDILRKRYGTGITFEGGVSDCGVCAVGKAQQLAHPKTANHNVNRSFQLCYGDLMGPFTPVAIGGYKYISKITDKYTKW 120
            V    +WHRR+GH++ +SLD+LR++  +GI + G V DC  C +GK+ Q  HPK A + V+  FQL + D +GPFTP A+GG+KY +K  D++TKW
Sbjct:  570 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKW 665

[Close]

BLAST of mRNA_H-elongata_contig112272.998.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 1.640e-24
Identity = 46/96 (47.92%), Postives = 64/96 (66.67%), Query Frame = 0

Query:   25 VANDQVWHRRLGHLHAQSLDILRKRYGTGITFEGGVSDCGVCAVGKAQQLAHPKTANHNVNRSFQLCYGDLMGPFTPVAIGGYKYISKITDKYTKW 120
            V +  +WHRR+GH++ +SLD+LRK    G+ + G V+DC VC +GK+ Q  HPK   + V R FQ    D +GPFTP A+GG+KY +K  D+ TKW
Sbjct:  283 VESADLWHRRMGHINGKSLDVLRKEPVNGVDYTGNVNDCCVCPLGKSAQQPHPKQVTYGVLRPFQHVSVDTLGPFTPTALGGFKYATKFVDQQTKW 378

[Close]

BLAST of mRNA_H-elongata_contig112272.998.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 3.260e-22
Identity = 49/104 (47.12%), Postives = 69/104 (66.35%), Query Frame = 0

Query:   17 SKEIAMNAVANDQVWHRRLGHLHAQSLDILRKRYGTGITFEGGVSDCGVCAVGKAQQLAHPKTANHNVNRSFQLCYGDLMGPFTPVAIGGYKYISKITDKYTKW 120
            S  +AM A + D +WHRRLGH+ ++SLD+LRK    G+ + G +  C VCA+GK+ Q  HPK A ++V+R FQ+   DLMGP +P A  G++Y+SK     TKW
Sbjct:   27 SPNMAMRAESAD-LWHRRLGHIDSRSLDVLRKIDDNGVDYTGPMETCDVCAIGKSSQRPHPKKATYDVSRHFQVST-DLMGPISPPARRGFRYVSKFVHGNTKW 128

[Close]

BLAST of mRNA_H-elongata_contig112272.998.1 vs. uniprot
Match: A0A6H5KP59_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP59_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 1.970e-21
Identity = 50/108 (46.30%), Postives = 65/108 (60.19%), Query Frame = 0

Query:   15 YGSKEIAMNAVANDQVWHRRLGHLHAQSLDILRKRYGTGITFEGGVSDCGVCAVGKAQQLAHPKTANHNVNRSFQLCYGDLMGPFTPVAI---GGYKYISKITDKYTK 119
            Y +  +    V+ D  WHRRLGHL+A+SL+ILRK  GTG+ +   +S CGVC +GK +Q  HPK +   ++R  QL   D MGP  P A    G + Y  KITD YTK
Sbjct:  294 YTANAVCFTLVSAD-TWHRRLGHLNARSLEILRKDTGTGVDYRDSLSPCGVCQIGKHKQSPHPKQSTRELSRPGQLVVIDSMGPVNPPAYYKGGSFPYACKITDDYTK 400

[Close]

BLAST of mRNA_H-elongata_contig112272.998.1 vs. uniprot
Match: A0A6H5KZ34_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ34_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 3.170e-21
Identity = 47/92 (51.09%), Postives = 58/92 (63.04%), Query Frame = 0

Query:   31 WHRRLGHLHAQSLDILRKRYGTGITFEGGVSDCGVCAVGKAQQLAHPKTANHNVNRSFQLCYGDLMGPFTPVAI---GGYKYISKITDKYTK 119
            WHRRLGHL+A+SLDILRK  GTG+ +   +S CGVC + K +Q  HPK +   ++R  QL   D MGP  P A    G + Y  KITD YTK
Sbjct:   45 WHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTK 136

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig112272.998.1 vs. uniprot

BLAST of mRNA_H-elongata_contig112272.998.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5K1J1_9PHAE	4.800e-29	49.17	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JBV6_9PHAE	6.280e-27	51.04	Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5KNH5_9PHAE	4.000e-26	47.92	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KJN3_9PHAE	4.040e-26	47.92	Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5KJH6_9PHAE	4.110e-26	47.92	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5J842_9PHAE	4.120e-26	47.92	Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5KXM1_9PHAE	1.640e-24	47.92	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KBU1_9PHAE	3.260e-22	47.12	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5KP59_9PHAE	1.970e-21	46.30	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5KZ34_9PHAE	3.170e-21	51.09	Integrase catalytic domain-containing protein n=2 ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 29..71 e-value: 1.7E-6 score: 27.7

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig112272	contig	H-elongata_contig112272:1779..2141 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig112272.998.1	mRNA_H-elongata_contig112272.998.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig112272 1779..2141 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig112272.998.1 ID=prot_H-elongata_contig112272.998.1|Name=mRNA_H-elongata_contig112272.998.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
GNLYSFVLDLSADGYGSKEIAMNAVANDQVWHRRLGHLHAQSLDILRKRY
GTGITFEGGVSDCGVCAVGKAQQLAHPKTANHNVNRSFQLCYGDLMGPFT
PVAIGGYKYISKITDKYTKWT

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR025724	GAG-pre-integrase_dom