prot_H-elongata_contig112191.992.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig112191.992.1
Unique Nameprot_H-elongata_contig112191.992.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length341
Homology
BLAST of mRNA_H-elongata_contig112191.992.1 vs. uniprot
Match: D8LFM1_ECTSI (Rab3 GTPase-activating protein catalytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFM1_ECTSI)

HSP 1 Score: 197 bits (500), Expect = 1.340e-52
Identity = 119/243 (48.97%), Postives = 139/243 (57.20%), Query Frame = 0
Query:  113 DQLLWASTVAAASCRCSIPVLVTCDWDG-VEDEGGFGRERNAVGEGGKWRGGGGGASWKGYSAPGSRGTACSVRFQTAWTDRPPVECLYLDGLTELLLSKIKDAHCLPGRAFAPKVSTAVQQAWEWTKPNA-ATLTPAPGLPW-GGAHWTKIRWGLMVAGARTEKVGEVERSLTVDEAPEAIASPT-----------ALHRDGRERSEAAIR-LLSAVGGGDKM---TPLWGPSQVFLVGMRV 337
            D LLWA+TVAA +CRCS+PVLV+CDWDG VED+   G    +            GAS KGYS PGS+G ACSVRFQTAWT++P  ECL+LDGLT+L LSKI+DAHCLPGRAFAP VST VQQ+WEWTKP   A   PAP LPW GG                     +  R  T    P     P            A  R G    E A+R LL A+GGG +    TP+WGP +  LV + V
Sbjct:    4 DHLLWATTVAAGNCRCSVPVLVSCDWDGLVEDDSSGGVVVQS------------GASCKGYSTPGSKGVACSVRFQTAWTEKPSRECLFLDGLTDLFLSKIRDAHCLPGRAFAPIVSTTVQQSWEWTKPEEEAAQLPAPALPWEGGXXXXXXXXXXXXXXXXXXXXXDGRRGGTSLGEPTVGGDPQGPTTXXXXXXXAGDRGGVGSREDAVRQLLRAIGGGREQEIGTPVWGPDEDPLVSIFV 234          
BLAST of mRNA_H-elongata_contig112191.992.1 vs. uniprot
Match: A0A6H5JCY7_9PHAE (Rab3 GTPase-activating protein catalytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCY7_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 8.450e-50
Identity = 113/242 (46.69%), Postives = 134/242 (55.37%), Query Frame = 0
Query:  113 DQLLWASTVAAASCRCSIPVLVTCDWDGVEDEGGFGRERNAVGEGGKWRGGGGGASWKGYSAPGSRGTACSVRFQTAWTDRPPVECLYLDGLTELLLSKIKDAHCLPGRAFAPKVSTAVQQAWEWTKPNA-ATLTPAPGLPW-GGAHWTKIRWGLMVAGARTEKVGEVERSLT-VDEAPEA-----------IASPTALHRDGRERSEAAIRLLSAVGGG---DKMTPLWGPSQVFLVGMRV 337
            D LLWA+TVAA +C+CS+PVLV+CDWDG+ D+   G     V + G        AS KGYS PGS G ACSVRF TAWT++P  ECL+LDGLT+L LSKI+DAHCLPGRAFAP VST VQQ+WEWTKP   A   PAP LPW GG                        R  T + E P                          R +A  +LL AVGGG   +  TP+WGP +  LV + V
Sbjct:    4 DHLLWATTVAAGNCKCSVPVLVSCDWDGLVDDDSSG---GVVVQSG--------ASCKGYSTPGSTGIACSVRFHTAWTEKPSRECLFLDGLTDLFLSKIRDAHCLPGRAFAPIVSTTVQQSWEWTKPEEDAAQLPAPALPWEGGGXXXXXXXXXFXXXXXXXXXXXXRRGGTSLGEFPGGGDPQGPXXXXXXXXXXXXXXXXXAREDAVRQLLRAVGGGSGQESRTPVWGPDEDPLVSIFV 234          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112191.992.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFM1_ECTSI1.340e-5248.97Rab3 GTPase-activating protein catalytic subunit n... [more]
A0A6H5JCY7_9PHAE8.450e-5046.69Rab3 GTPase-activating protein catalytic subunit n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig112191contigH-elongata_contig112191:178..1739 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig112191.992.1mRNA_H-elongata_contig112191.992.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig112191 178..1739 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig112191.992.1 ID=prot_H-elongata_contig112191.992.1|Name=mRNA_H-elongata_contig112191.992.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=341bp
SGTSPPTNTSRARCLEHDGQLFSINLVVASAPPPELCPSPDSLPLTPSTA
SKDSKTAAPTIRATASRACDLDNPSLDFAAEGSLTPPQRWFGLKQYVLVR
GLGKSGEDGVSDDQLLWASTVAAASCRCSIPVLVTCDWDGVEDEGGFGRE
RNAVGEGGKWRGGGGGASWKGYSAPGSRGTACSVRFQTAWTDRPPVECLY
LDGLTELLLSKIKDAHCLPGRAFAPKVSTAVQQAWEWTKPNAATLTPAPG
LPWGGAHWTKIRWGLMVAGARTEKVGEVERSLTVDEAPEAIASPTALHRD
GRERSEAAIRLLSAVGGGDKMTPLWGPSQVFLVGMRVSRF*
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