mRNA_H-elongata_contig111529.943.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig111529.943.1
Unique NamemRNA_H-elongata_contig111529.943.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig111529.943.1 vs. uniprot
Match: D7FJE9_ECTSI (PTIF2, plastid translation intiation factor 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJE9_ECTSI)

HSP 1 Score: 158 bits (400), Expect = 5.850e-43
Identity = 82/99 (82.83%), Postives = 92/99 (92.93%), Query Frame = 1
Query:    1 VALVSAKQRTGLEGLLEKILLQSEVLELKSNPARAAEGVVIEASMKKGLGTVGTVLIQRGTLRVGDVFVAGVAWGRVRALIDDTGRRIKEAGPSMPVQV 297
            VA+VSAKQ++GL+ LLEKILLQSEVLELKSNP R+AEGV+IEA M++GLGTVGTVLIQRGTLRVGD+FVAG AWGRV+ALID  GRRIKEAGPS PVQV
Sbjct:  655 VAMVSAKQKSGLDELLEKILLQSEVLELKSNPDRSAEGVIIEARMERGLGTVGTVLIQRGTLRVGDIFVAGGAWGRVKALIDHQGRRIKEAGPSTPVQV 753          
BLAST of mRNA_H-elongata_contig111529.943.1 vs. uniprot
Match: A0A7S3Y8J2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8J2_HETAK)

HSP 1 Score: 140 bits (354), Expect = 7.360e-37
Identity = 69/96 (71.88%), Postives = 85/96 (88.54%), Query Frame = 1
Query:   10 VSAKQRTGLEGLLEKILLQSEVLELKSNPARAAEGVVIEASMKKGLGTVGTVLIQRGTLRVGDVFVAGVAWGRVRALIDDTGRRIKEAGPSMPVQV 297
            VSAKQR GL+ LLEK+LLQ+E+L+L++NP RAA+G VIEA +++GLG VGT LIQRGTLRVGDVF+AG +WG+VRAL+D  G RIKEAGPS+PVQV
Sbjct:  363 VSAKQRLGLDDLLEKVLLQAELLDLRANPDRAAQGAVIEARIERGLGAVGTTLIQRGTLRVGDVFLAGASWGKVRALLDTEGNRIKEAGPSVPVQV 458          
BLAST of mRNA_H-elongata_contig111529.943.1 vs. uniprot
Match: A0A835ZAQ9_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAQ9_9STRA)

HSP 1 Score: 139 bits (349), Expect = 1.700e-36
Identity = 70/99 (70.71%), Postives = 84/99 (84.85%), Query Frame = 1
Query:    1 VALVSAKQRTGLEGLLEKILLQSEVLELKSNPARAAEGVVIEASMKKGLGTVGTVLIQRGTLRVGDVFVAGVAWGRVRALIDDTGRRIKEAGPSMPVQV 297
            V  VSAK + GL+ LL+KILLQ+EVLELK+NP RAA+GVVIEA MK+GLGTV T LIQRGTL++GD+FVAG +WG+VR L++ TG RI EAGPS PVQV
Sbjct:  217 VGKVSAKNKDGLDDLLDKILLQAEVLELKANPNRAAQGVVIEAGMKQGLGTVATTLIQRGTLKIGDIFVAGASWGKVRLLMNHTGARITEAGPSTPVQV 315          
BLAST of mRNA_H-elongata_contig111529.943.1 vs. uniprot
Match: A0A6A7Y3B3_9HYPH (Translation initiation factor IF-2 n=1 Tax=Segnochrobactrum spirostomi TaxID=2608987 RepID=A0A6A7Y3B3_9HYPH)

HSP 1 Score: 136 bits (343), Expect = 2.870e-35
Identity = 69/97 (71.13%), Postives = 80/97 (82.47%), Query Frame = 1
Query:    7 LVSAKQRTGLEGLLEKILLQSEVLELKSNPARAAEGVVIEASMKKGLGTVGTVLIQRGTLRVGDVFVAGVAWGRVRALIDDTGRRIKEAGPSMPVQV 297
            LVSA QRT L+GLLE ILLQSEVLELK+NP R AEG VIEA + KG G V TVL+QRGTLRVGD+ +AG  WGRVRAL++D G ++KEAGPS PV+V
Sbjct:  662 LVSATQRTNLDGLLEAILLQSEVLELKANPDRPAEGSVIEAKLDKGRGPVATVLVQRGTLRVGDILIAGTEWGRVRALVNDRGEQVKEAGPSTPVEV 758          
BLAST of mRNA_H-elongata_contig111529.943.1 vs. uniprot
Match: A0A1M7ZJ59_9HYPH (Translation initiation factor IF-2 n=1 Tax=Pseudoxanthobacter soli DSM 19599 TaxID=1123029 RepID=A0A1M7ZJ59_9HYPH)

HSP 1 Score: 136 bits (342), Expect = 3.910e-35
Identity = 68/97 (70.10%), Postives = 80/97 (82.47%), Query Frame = 1
Query:    7 LVSAKQRTGLEGLLEKILLQSEVLELKSNPARAAEGVVIEASMKKGLGTVGTVLIQRGTLRVGDVFVAGVAWGRVRALIDDTGRRIKEAGPSMPVQV 297
            LVSAK+RT L+GLLE ILLQ+EVLELK+NP R AEG+VIEA + KG G V TVL+QRGTL  GD+ +AG  WGRVRALIDD G ++K AGPSMPV+V
Sbjct:  683 LVSAKERTNLDGLLEAILLQAEVLELKANPDRPAEGMVIEAKLDKGRGPVATVLVQRGTLNAGDILIAGAEWGRVRALIDDHGAQVKSAGPSMPVEV 779          
BLAST of mRNA_H-elongata_contig111529.943.1 vs. uniprot
Match: A0A3R9X973_9SPHN (Translation initiation factor IF-2 n=1 Tax=Sphingomonas ginkgonis TaxID=2315330 RepID=A0A3R9X973_9SPHN)

HSP 1 Score: 134 bits (336), Expect = 2.470e-34
Identity = 66/96 (68.75%), Postives = 82/96 (85.42%), Query Frame = 1
Query:   10 VSAKQRTGLEGLLEKILLQSEVLELKSNPARAAEGVVIEASMKKGLGTVGTVLIQRGTLRVGDVFVAGVAWGRVRALIDDTGRRIKEAGPSMPVQV 297
            VSA Q+T L+GLL+ I LQ+E+LEL++NPARAAEG VIEA + KG G + TVL+QRGTLRVGD+FV G + GRVRA+IDD GR++KEAGPSMPV+V
Sbjct:  496 VSALQKTNLDGLLDAIALQAEILELRANPARAAEGTVIEAKLDKGRGPLATVLVQRGTLRVGDIFVVGASSGRVRAMIDDHGRQVKEAGPSMPVEV 591          
BLAST of mRNA_H-elongata_contig111529.943.1 vs. uniprot
Match: A0A1N7JMV7_9PROT (Translation initiation factor IF-2 n=1 Tax=Insolitispirillum peregrinum TaxID=80876 RepID=A0A1N7JMV7_9PROT)

HSP 1 Score: 133 bits (335), Expect = 3.420e-34
Identity = 64/96 (66.67%), Postives = 81/96 (84.38%), Query Frame = 1
Query:   10 VSAKQRTGLEGLLEKILLQSEVLELKSNPARAAEGVVIEASMKKGLGTVGTVLIQRGTLRVGDVFVAGVAWGRVRALIDDTGRRIKEAGPSMPVQV 297
            VSAK+R  L+ L E ILLQ+E+LELK+NP R AEG ++EA M+KG G+V TVL++RGTLRVGD+FVAG  WGRVRA+IDD G R++EAGPSMPV++
Sbjct:  576 VSAKKRLNLDKLEEAILLQAEILELKANPNRLAEGTIVEAKMEKGRGSVATVLVKRGTLRVGDIFVAGAEWGRVRAMIDDHGNRVEEAGPSMPVEI 671          
BLAST of mRNA_H-elongata_contig111529.943.1 vs. uniprot
Match: A0A8J6YHG7_9PROT (Translation initiation factor IF-2 n=1 Tax=Phaeovibrio sulfidiphilus TaxID=1220600 RepID=A0A8J6YHG7_9PROT)

HSP 1 Score: 133 bits (334), Expect = 4.610e-34
Identity = 65/96 (67.71%), Postives = 82/96 (85.42%), Query Frame = 1
Query:   10 VSAKQRTGLEGLLEKILLQSEVLELKSNPARAAEGVVIEASMKKGLGTVGTVLIQRGTLRVGDVFVAGVAWGRVRALIDDTGRRIKEAGPSMPVQV 297
            VSAK+R  LEGL E ILLQ+E+L+LK+NP  +AEGVVIEA M+KG G+V TVL+QRGTL+VGD+FVAG  WGRVRAL+D+ GRR+ +A P+MPV+V
Sbjct:  498 VSAKKRINLEGLEEAILLQAEILDLKANPDHSAEGVVIEAKMEKGRGSVATVLVQRGTLKVGDIFVAGCEWGRVRALVDENGRRVHKATPAMPVEV 593          
BLAST of mRNA_H-elongata_contig111529.943.1 vs. uniprot
Match: IF2_MAGSA (Translation initiation factor IF-2 n=6 Tax=Magnetospirillum TaxID=13134 RepID=IF2_MAGSA)

HSP 1 Score: 133 bits (334), Expect = 4.630e-34
Identity = 66/96 (68.75%), Postives = 81/96 (84.38%), Query Frame = 1
Query:   10 VSAKQRTGLEGLLEKILLQSEVLELKSNPARAAEGVVIEASMKKGLGTVGTVLIQRGTLRVGDVFVAGVAWGRVRALIDDTGRRIKEAGPSMPVQV 297
            VSAK+R  LE L E ILLQ+E+L+LK+NP RAA+GVV+EA M+KG G+V TVL+Q+GTL+VG+VFVAG  WGRVRAL+DD G  IKEAGPS PV+V
Sbjct:  516 VSAKKRLNLEKLEEAILLQAEILDLKANPTRAAQGVVVEAKMEKGRGSVATVLVQKGTLKVGEVFVAGAEWGRVRALVDDHGNSIKEAGPSTPVEV 611          
BLAST of mRNA_H-elongata_contig111529.943.1 vs. uniprot
Match: A0A286G945_9PROT (Translation initiation factor IF-2 n=1 Tax=Caenispirillum bisanense TaxID=414052 RepID=A0A286G945_9PROT)

HSP 1 Score: 132 bits (333), Expect = 6.340e-34
Identity = 66/96 (68.75%), Postives = 80/96 (83.33%), Query Frame = 1
Query:   10 VSAKQRTGLEGLLEKILLQSEVLELKSNPARAAEGVVIEASMKKGLGTVGTVLIQRGTLRVGDVFVAGVAWGRVRALIDDTGRRIKEAGPSMPVQV 297
            VSAK+R  LE L E ILLQSE+L+LK+NP R AEG V+EA M+KG G+V TVLI+RGTLRVGD+FVAG  WGRVRA+IDD G R++EAGP+ PV+V
Sbjct:  541 VSAKKRLNLEKLEEAILLQSEILDLKANPNRMAEGTVVEAKMEKGRGSVATVLIRRGTLRVGDIFVAGTEWGRVRAMIDDHGNRVEEAGPAFPVEV 636          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111529.943.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJE9_ECTSI5.850e-4382.83PTIF2, plastid translation intiation factor 2 n=2 ... [more]
A0A7S3Y8J2_HETAK7.360e-3771.88Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835ZAQ9_9STRA1.700e-3670.71P-loop containing nucleoside triphosphate hydrolas... [more]
A0A6A7Y3B3_9HYPH2.870e-3571.13Translation initiation factor IF-2 n=1 Tax=Segnoch... [more]
A0A1M7ZJ59_9HYPH3.910e-3570.10Translation initiation factor IF-2 n=1 Tax=Pseudox... [more]
A0A3R9X973_9SPHN2.470e-3468.75Translation initiation factor IF-2 n=1 Tax=Sphingo... [more]
A0A1N7JMV7_9PROT3.420e-3466.67Translation initiation factor IF-2 n=1 Tax=Insolit... [more]
A0A8J6YHG7_9PROT4.610e-3467.71Translation initiation factor IF-2 n=1 Tax=Phaeovi... [more]
IF2_MAGSA4.630e-3468.75Translation initiation factor IF-2 n=6 Tax=Magneto... [more]
A0A286G945_9PROT6.340e-3468.75Translation initiation factor IF-2 n=1 Tax=Caenisp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig111529contigH-elongata_contig111529:262..1264 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score158.3
Seed ortholog evalue1.8e-36
Seed eggNOG ortholog2880.D7FJE9
KEGG koko:K02519
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG0532@1,KOG1145@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012,ko03029
Hectar predicted targeting categoryother localisation
Exons2
Model size297
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929638.7669153-CDS-H-elongata_contig111529:261..4101622929638.7669153-CDS-H-elongata_contig111529:261..410Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111529 262..410 -
1691679101.2809544-CDS-H-elongata_contig111529:261..4101691679101.2809544-CDS-H-elongata_contig111529:261..410Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111529 262..410 -
1622929638.7820022-CDS-H-elongata_contig111529:1116..12641622929638.7820022-CDS-H-elongata_contig111529:1116..1264Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111529 1117..1264 -
1691679101.2905679-CDS-H-elongata_contig111529:1116..12641691679101.2905679-CDS-H-elongata_contig111529:1116..1264Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111529 1117..1264 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig111529.943.1prot_H-elongata_contig111529.943.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig111529 262..1264 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig111529.943.1

>prot_H-elongata_contig111529.943.1 ID=prot_H-elongata_contig111529.943.1|Name=mRNA_H-elongata_contig111529.943.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
VALVSAKQRTGLEGLLEKILLQSEVLELKSNPARAAEGVVIEASMKKGLG
TVGTVLIQRGTLRVGDVFVAGVAWGRVRALIDDTGRRIKEAGPSMPVQV
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mRNA from alignment at H-elongata_contig111529:262..1264-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig111529.943.1 ID=mRNA_H-elongata_contig111529.943.1|Name=mRNA_H-elongata_contig111529.943.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1003bp|location=Sequence derived from alignment at H-elongata_contig111529:262..1264- (Himanthalia elongata Himel1 dioecious)
GTTGCTCTGGTGTCGGCGAAGCAAAGGACGGGTCTAGAGGGACTCCTGGA GAAGATCCTGCTGCAGTCGGAGGTGCTGGAGCTGAAGTCGAACCCCGCGC GGGCCGCGGAGGGGGTGGTTATCGAGGCCTCCATGAAAAAGGGGCTCGGT GAGAAGCGGAAGAGTGGTAGCGCTCGGGTACACACACACACATAGTATTT CGCTTGCTCAAGCGTTCGGCGCTGTTGGTGTTATAACTGCTGTTTTTATT TTTGCCATCCCGTTTTTTTTTATTCTAGTTCGATCAGCCCGTGTTCTCAC ACGCCCTCTATGGTTCGGAAACGGATGATATCGGGCAAACCATAAGGCAA ACCGAAAGATCGGATTGTGCTTTCTACCAAGCCTACTTAAAAAAATAAGA CACCCGCAGTCCTGCTGCGGCTGCTGTTGCTGCGAAGAGGAGAATGAGAA GCGAGTCCCCTTCCCTGATTTTCACAAAAGGAATTGTAAAGAAGAATGAT ACGGAGGGTTTGAAGGAGCTCAGAGTTTTCAATAAAAAATAGAACGGTGT ACCACACCATGGTACTTAAGCTTACGGCAGATATAATGATGTGTACCGCA TCATCTAGTACACCGGTGGCTCTGGGTTGCGGTGTCCATCTCGTCCTGTT GAGGTATGGGTCTCGAGGTGCTTTCCTTTTCTCTATTCTCTCCTTTCGAC TACCCTCCTCGTTTCCGCCACACATGGCACGGCGTGATTTTGTGGCCGTC CTTCCCCAAGAATACATTTCCAACTTGCGTCGCGTCGCAGTATCACTTCA CAATCCTTCCCGCCCCTCCCGCCCACCCTTTTGTCTTTGGTACCCTGGAC ACAGGAACGGTGGGTACGGTGCTAATCCAGAGGGGGACGCTGCGCGTGGG GGACGTATTCGTGGCCGGGGTCGCCTGGGGGAGGGTGCGCGCCCTCATCG ACGATACTGGGCGACGGATAAAGGAAGCCGGTCCGTCGATGCCTGTGCAG GTG
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Coding sequence (CDS) from alignment at H-elongata_contig111529:262..1264-

>mRNA_H-elongata_contig111529.943.1 ID=mRNA_H-elongata_contig111529.943.1|Name=mRNA_H-elongata_contig111529.943.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig111529:262..1264- (Himanthalia elongata Himel1 dioecious)
GTTGCTCTGGTGTCGGCGAAGCAAAGGACGGGTCTAGAGGGACTCCTGGA
GAAGATCCTGCTGCAGTCGGAGGTGCTGGAGCTGAAGTCGAACCCCGCGC
GGGCCGCGGAGGGGGTGGTTATCGAGGCCTCCATGAAAAAGGGGCTCGGT
TGCTCTGGTGTCGGCGAAGCAAAGGACGGGTCTAGAGGGACTCCTGGAGA
AGATCCTGCTGCAGTCGGAGGTGCTGGAGCTGAAGTCGAACCCCGCGCGG
GCCGCGGAGGGGGTGGTTATCGAGGCCTCCATGAAAAAGGGGCTCGGAAC
GGTGGGTACGGTGCTAATCCAGAGGGGGACGCTGCGCGTGGGGGACGTAT
TCGTGGCCGGGGTCGCCTGGGGGAGGGTGCGCGCCCTCATCGACGATACT
GGGCGACGGATAAAGGAAGCCGGTCCGTCGATGCCTGTGCAGGTGGAACG
GTGGGTACGGTGCTAATCCAGAGGGGGACGCTGCGCGTGGGGGACGTATT
CGTGGCCGGGGTCGCCTGGGGGAGGGTGCGCGCCCTCATCGACGATACTG
GGCGACGGATAAAGGAAGCCGGTCCGTCGATGCCTGTGCAGGTG
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