prot_H-elongata_contig111527.942.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig111527.942.1
Unique Nameprot_H-elongata_contig111527.942.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length114
Homology
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BLAST of mRNA_H-elongata_contig111527.942.1 vs. uniprot
Match: D7FSA2_ECTSI (Xpo1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSA2_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 2.900e-45
Identity = 80/108 (74.07%), Postives = 93/108 (86.11%), Query Frame = 0 
Query:    7 VEQALRVVLGGGGGAPSPDSKERLRATEWLHSFRRRDDAWDACMAVLGAPRGLGMNQVTFEDQVFASQALLYKCRRRRAAITSEDVGRLLRLALGFTGRGLRPVLTQV 114
            +++A+RVVLGG GG PS D KERLRATEWLHSF+RRDDAW AC+AVLGAPRG+  NQV   +Q+FASQALLYKCRRRRAAI+ +DVG LL+LAL FTGRGLR VL Q+
Sbjct:   23 LKEAVRVVLGGYGGTPSGDPKERLRATEWLHSFQRRDDAWSACVAVLGAPRGVADNQVGLNEQIFASQALLYKCRRRRAAISGDDVGCLLQLALQFTGRGLRAVLVQL 130
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BLAST of mRNA_H-elongata_contig111527.942.1 vs. uniprot
Match: A0A6H5L1R2_9PHAE (Xpo1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1R2_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.700e-19
Identity = 46/63 (73.02%), Postives = 53/63 (84.13%), Query Frame = 0 
Query:   51 AVLGAPRGLGMNQVTFEDQVFASQALLYKCRRRRAAITSEDVGRLLRLALGFTGRGLRPVLTQ 113
            AVLGAPRG+  NQV   +Q+FASQALLYKCRRR+AAI+ +DVG LL+LAL FTGRGLR VL Q
Sbjct:   25 AVLGAPRGVADNQVGLNEQIFASQALLYKCRRRKAAISGDDVGCLLQLALQFTGRGLRAVLVQ 87
[Close]
BLAST of mRNA_H-elongata_contig111527.942.1 vs. uniprot
Match: A0A6H5KUP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUP5_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 2.870e-15
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 0 
Query:   10 ALRVVLGGGGGAPSPDSKERLRATEWLHSFRRRDDAWDACMA 51
            A+RVVLGG GG PS D KERLRATEWLHSF+RRDDAW AC+A
Sbjct:   65 AVRVVLGGYGGTPSGDPKERLRATEWLHSFQRRDDAWSACVA 106
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111527.942.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FSA2_ECTSI2.900e-4574.07Xpo1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L1R2_9PHAE1.700e-1973.02Xpo1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KUP5_9PHAE2.870e-1580.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 5..114
e-value: 6.1E-9
score: 36.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig111527contigH-elongata_contig111527:179..1609 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig111527.942.1mRNA_H-elongata_contig111527.942.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig111527 179..1609 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig111527.942.1 ID=prot_H-elongata_contig111527.942.1|Name=mRNA_H-elongata_contig111527.942.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
MGFRADVEQALRVVLGGGGGAPSPDSKERLRATEWLHSFRRRDDAWDACM
AVLGAPRGLGMNQVTFEDQVFASQALLYKCRRRRAAITSEDVGRLLRLAL
GFTGRGLRPVLTQV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like