prot_H-elongata_contig111442.936.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig111442.936.1
Unique Nameprot_H-elongata_contig111442.936.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length236
Homology
BLAST of mRNA_H-elongata_contig111442.936.1 vs. uniprot
Match: D7FHT8_ECTSI (Pseudouridylate synthase 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHT8_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 5.020e-34
Identity = 63/78 (80.77%), Postives = 70/78 (89.74%), Query Frame = 0
Query:  152 GAHVTEIDYCRMLNRVLPPDIRALAWAPVTEGFSARFSCSDRT-RYFFLARDLDIKAMDAAASRIVGEHDFRNLCKIG 228
            G  VTEIDYC +LNRVLPP +R LAWAPVTEGFSARFSCSDRT RYFF+ARD+D+KAM+ AAS+IVG HDFRNLCKIG
Sbjct:  366 GGEVTEIDYCGILNRVLPPGVRTLAWAPVTEGFSARFSCSDRTYRYFFMARDMDVKAMNEAASKIVGSHDFRNLCKIG 443          
BLAST of mRNA_H-elongata_contig111442.936.1 vs. uniprot
Match: A0A6H5JEX6_9PHAE (PseudoU_synth_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX6_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 2.230e-32
Identity = 63/77 (81.82%), Postives = 70/77 (90.91%), Query Frame = 0
Query:  152 GAHVTEIDYCRMLNRVLPPDIRALAWAPVTEGFSARFSCSDRT-RYFFLARDLDIKAMDAAASRIVGEHDFRNLCKI 227
            G  +TEIDYC +LNRVLPP IRALAWAPVTEGFSARFSCSDRT RYFF+ARD++IKAM+ AAS+IVG HDFRNLCKI
Sbjct:  375 GGEITEIDYCGILNRVLPPGIRALAWAPVTEGFSARFSCSDRTYRYFFMARDMNIKAMNEAASKIVGSHDFRNLCKI 451          
BLAST of mRNA_H-elongata_contig111442.936.1 vs. uniprot
Match: K7EAA9_ORNAN (Pseudouridine synthase 3 n=2 Tax=Monotremata TaxID=9255 RepID=K7EAA9_ORNAN)

HSP 1 Score: 107 bits (267), Expect = 3.130e-23
Identity = 52/79 (65.82%), Postives = 58/79 (73.42%), Query Frame = 0
Query:  150 RTGAHVTEIDYCRMLNRVLPPDIRALAWAPVTEGFSARFSCSDRT-RYFFLARDLDIKAMDAAASRIVGEHDFRNLCKI 227
            R  A   EI Y  +LNRVLPPDIR LAWAPV  GFSARF+C  RT RYFF   DLD++AMD AA + VG HDFRNLCK+
Sbjct:  147 RMDARTAEIRYTHILNRVLPPDIRVLAWAPVGSGFSARFNCLQRTYRYFFPRADLDLEAMDRAAQKYVGTHDFRNLCKM 225          
BLAST of mRNA_H-elongata_contig111442.936.1 vs. uniprot
Match: A0A7K6TLG9_9AVES (PUS3 synthase (Fragment) n=1 Tax=Aegotheles bennettii TaxID=48278 RepID=A0A7K6TLG9_9AVES)

HSP 1 Score: 106 bits (265), Expect = 3.640e-23
Identity = 53/77 (68.83%), Postives = 57/77 (74.03%), Query Frame = 0
Query:  152 GAHVTEIDYCRMLNRVLPPDIRALAWAPVTEGFSARFSCSDRT-RYFFLARDLDIKAMDAAASRIVGEHDFRNLCKI 227
            G+   E+ Y  MLNRVLPPDIRALAWAPV   FSARFSC  RT RYFF   DLD+  MDAAA R VG HDFRNLCK+
Sbjct:  141 GSGGEELRYTHMLNRVLPPDIRALAWAPVEPRFSARFSCLSRTYRYFFPRADLDVALMDAAAQRFVGTHDFRNLCKM 217          
BLAST of mRNA_H-elongata_contig111442.936.1 vs. uniprot
Match: A0A2I0TCL3_LIMLA (tRNA pseudouridine synthase n=1 Tax=Limosa lapponica baueri TaxID=1758121 RepID=A0A2I0TCL3_LIMLA)

HSP 1 Score: 104 bits (260), Expect = 1.190e-22
Identity = 51/72 (70.83%), Postives = 55/72 (76.39%), Query Frame = 0
Query:  157 EIDYCRMLNRVLPPDIRALAWAPVTEGFSARFSCSDRT-RYFFLARDLDIKAMDAAASRIVGEHDFRNLCKI 227
            E+ Y  +LNRVLPPDIRALAWAPV   FSARFSC  RT RYFF   DLD+  MDAAA R VG HDFRNLCK+
Sbjct:   65 ELRYTHILNRVLPPDIRALAWAPVEPDFSARFSCLQRTYRYFFPCADLDVALMDAAAQRYVGTHDFRNLCKM 136          
BLAST of mRNA_H-elongata_contig111442.936.1 vs. uniprot
Match: A0A7L4DBW5_9AVES (PUS3 synthase (Fragment) n=2 Tax=Coraciiformes TaxID=8936 RepID=A0A7L4DBW5_9AVES)

HSP 1 Score: 105 bits (261), Expect = 1.350e-22
Identity = 51/72 (70.83%), Postives = 56/72 (77.78%), Query Frame = 0
Query:  157 EIDYCRMLNRVLPPDIRALAWAPVTEGFSARFSCSDRT-RYFFLARDLDIKAMDAAASRIVGEHDFRNLCKI 227
            E+ Y  +LNRVLPPDIRALAWAPV  GFSARFSC  RT RYFF   DLD+  M+AAA R VG HDFRNLCK+
Sbjct:  163 ELRYTHILNRVLPPDIRALAWAPVEPGFSARFSCLKRTYRYFFPCADLDVDLMNAAAQRYVGTHDFRNLCKM 234          
BLAST of mRNA_H-elongata_contig111442.936.1 vs. uniprot
Match: K7G5U2_PELSI (PseudoU_synth_1 domain-containing protein n=13 Tax=Testudines TaxID=8459 RepID=K7G5U2_PELSI)

HSP 1 Score: 105 bits (262), Expect = 1.430e-22
Identity = 51/79 (64.56%), Postives = 57/79 (72.15%), Query Frame = 0
Query:  150 RTGAHVTEIDYCRMLNRVLPPDIRALAWAPVTEGFSARFSCSDRT-RYFFLARDLDIKAMDAAASRIVGEHDFRNLCKI 227
            +T +   EI Y  +LNRVLPPDIR LAWAPV   FSARFSC  RT RYFF   DLD+  MDAAA + VG HDFRNLCK+
Sbjct:  156 KTSSSANEIRYTHILNRVLPPDIRVLAWAPVEPSFSARFSCLKRTYRYFFPRADLDVTLMDAAAQKYVGTHDFRNLCKM 234          
BLAST of mRNA_H-elongata_contig111442.936.1 vs. uniprot
Match: A0A851D926_TODME (tRNA pseudouridine synthase (Fragment) n=1 Tax=Todus mexicanus TaxID=135184 RepID=A0A851D926_TODME)

HSP 1 Score: 103 bits (257), Expect = 1.510e-22
Identity = 50/72 (69.44%), Postives = 56/72 (77.78%), Query Frame = 0
Query:  157 EIDYCRMLNRVLPPDIRALAWAPVTEGFSARFSCSDRT-RYFFLARDLDIKAMDAAASRIVGEHDFRNLCKI 227
            E+ Y  +LNRVLPPDIRALAWAPV   FSARFSC  RT RYFF   DLD++ M+AAA R VG HDFRNLCK+
Sbjct:   38 ELRYTHILNRVLPPDIRALAWAPVEPSFSARFSCLKRTYRYFFPCADLDVELMNAAAQRYVGTHDFRNLCKM 109          
BLAST of mRNA_H-elongata_contig111442.936.1 vs. uniprot
Match: A0A7K7WVJ4_9AVES (PUS3 synthase (Fragment) n=8 Tax=Tinamidae TaxID=8803 RepID=A0A7K7WVJ4_9AVES)

HSP 1 Score: 104 bits (260), Expect = 1.630e-22
Identity = 54/83 (65.06%), Postives = 57/83 (68.67%), Query Frame = 0
Query:  146 EEAVRTGAHVTEIDYCRMLNRVLPPDIRALAWAPVTEGFSARFSCSDRT-RYFFLARDLDIKAMDAAASRIVGEHDFRNLCKI 227
            EE  R      E+ Y  MLNRVLPPDIR LAWAPV   FSARFSC  RT RYFF A  LD+  MDAAA R VG HDFRNLCK+
Sbjct:  140 EELARGECTRGELRYAHMLNRVLPPDIRVLAWAPVEAAFSARFSCLRRTYRYFFPAAGLDVALMDAAAQRFVGTHDFRNLCKM 222          
BLAST of mRNA_H-elongata_contig111442.936.1 vs. uniprot
Match: A0A7L0EUA4_TROML (PUS3 synthase (Fragment) n=1 Tax=Trogon melanurus TaxID=56311 RepID=A0A7L0EUA4_TROML)

HSP 1 Score: 104 bits (260), Expect = 2.170e-22
Identity = 51/72 (70.83%), Postives = 55/72 (76.39%), Query Frame = 0
Query:  157 EIDYCRMLNRVLPPDIRALAWAPVTEGFSARFSCSDRT-RYFFLARDLDIKAMDAAASRIVGEHDFRNLCKI 227
            E+ Y  +LNRVLPPDIRALAWAPV   FSARFSC  RT RYFF   DLD+  MDAAA R VG HDFRNLCK+
Sbjct:  159 ELRYTHILNRVLPPDIRALAWAPVAPDFSARFSCLKRTYRYFFPCADLDVALMDAAAQRYVGTHDFRNLCKM 230          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111442.936.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHT8_ECTSI5.020e-3480.77Pseudouridylate synthase 3 n=1 Tax=Ectocarpus sili... [more]
A0A6H5JEX6_9PHAE2.230e-3281.82PseudoU_synth_1 domain-containing protein n=1 Tax=... [more]
K7EAA9_ORNAN3.130e-2365.82Pseudouridine synthase 3 n=2 Tax=Monotremata TaxID... [more]
A0A7K6TLG9_9AVES3.640e-2368.83PUS3 synthase (Fragment) n=1 Tax=Aegotheles bennet... [more]
A0A2I0TCL3_LIMLA1.190e-2270.83tRNA pseudouridine synthase n=1 Tax=Limosa lapponi... [more]
A0A7L4DBW5_9AVES1.350e-2270.83PUS3 synthase (Fragment) n=2 Tax=Coraciiformes Tax... [more]
K7G5U2_PELSI1.430e-2264.56PseudoU_synth_1 domain-containing protein n=13 Tax... [more]
A0A851D926_TODME1.510e-2269.44tRNA pseudouridine synthase (Fragment) n=1 Tax=Tod... [more]
A0A7K7WVJ4_9AVES1.630e-2265.06PUS3 synthase (Fragment) n=8 Tax=Tinamidae TaxID=8... [more]
A0A7L0EUA4_TROML2.170e-2270.83PUS3 synthase (Fragment) n=1 Tax=Trogon melanurus ... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020095Pseudouridine synthase I, TruA, C-terminalGENE3D3.30.70.660coord: 184..232
e-value: 1.7E-5
score: 26.5
NoneNo IPR availablePANTHERPTHR11142:SF5TRNA PSEUDOURIDINE(38/39) SYNTHASEcoord: 144..228
IPR001406Pseudouridine synthase I, TruAPANTHERPTHR11142PSEUDOURIDYLATE SYNTHASEcoord: 144..228
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILY55120Pseudouridine synthasecoord: 151..228

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig111442contigH-elongata_contig111442:1053..2004 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig111442.936.1mRNA_H-elongata_contig111442.936.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig111442 1053..2004 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig111442.936.1 ID=prot_H-elongata_contig111442.936.1|Name=mRNA_H-elongata_contig111442.936.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=236bp
VITVSVRSNFPKDLDTEVPTSPLGSLWIPNNRNTTAGDNANCSVNPEPEN
LREQGGAIACCPAKADSVEDNPETVRGARDCSGREQNGGWVVDPEGSLDC
GGGDDGGKGGDGRGQKVIEDGCSKSGASVESSPTSLEQQPKVKRKEEAVR
TGAHVTEIDYCRMLNRVLPPDIRALAWAPVTEGFSARFSCSDRTRYFFLA
RDLDIKAMDAAASRIVGEHDFRNLCKIGELTPCPS*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020095PsdUridine_synth_TruA_C
IPR001406PsdUridine_synth_TruA
IPR020103PsdUridine_synth_cat_dom_sf