prot_H-elongata_contig111214.919.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig111214.919.1
Unique Nameprot_H-elongata_contig111214.919.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length62
Homology
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BLAST of mRNA_H-elongata_contig111214.919.1 vs. uniprot
Match: A0A6H5L4T7_9PHAE (TFIIB-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4T7_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 3.210e-12
Identity = 34/56 (60.71%), Postives = 47/56 (83.93%), Query Frame = 0 
Query:    7 TVRGTHLIPQLCNKLGVPAFITMAAQNVAEKASELDLVGGVMPSAVAAAAVLLICS 62
            ++RG H IP LC+KLG+P F+++AA++ A++AS  DLV G+ PSAVAAAAVLL+CS
Sbjct:  211 SLRGEHHIPLLCDKLGLPPFVSVAARHAAQQASRWDLVDGMKPSAVAAAAVLLVCS 266
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BLAST of mRNA_H-elongata_contig111214.919.1 vs. uniprot
Match: A0A835YX77_9STRA (TFIIB-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX77_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 5.850e-5
Identity = 23/49 (46.94%), Postives = 35/49 (71.43%), Query Frame = 0 
Query:    8 VRGTHLIPQLCNKLGVPAFITMAAQNVAEKASELDLVGGVMPSAVAAAA 56
            + G HL+P+LC+ LGVP  ++ AA+ +A + +EL L+ G+ P  VAAAA
Sbjct:  211 ILGEHLVPRLCDALGVPQ-VSQAAKEIATQCAELSLIDGIKPQVVAAAA 258
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BLAST of mRNA_H-elongata_contig111214.919.1 vs. uniprot
Match: A0A8D3A2J0_SCOMX (Transcription initiation factor IIB n=4 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A8D3A2J0_SCOMX)

HSP 1 Score: 48.1 bits (113), Expect = 7.940e-5
Identity = 26/57 (45.61%), Postives = 36/57 (63.16%), Query Frame = 0 
Query:    1 MDIDKGTVRGTHLIPQLCNKLGVPAFITMAAQNVAEKASELDLVGGVMPSAVAAAAV 57
            +DI    +    L+P+ C+ LG+P  + MAA  +A KA ELDLV G  P +VAAAA+
Sbjct:  204 LDISLDLINPGDLMPRFCSNLGLPKPVRMAANFIARKAVELDLVPGRSPISVAAAAI 260
[Close]
BLAST of mRNA_H-elongata_contig111214.919.1 vs. uniprot
Match: A0A6A4TM01_SCOMX (Transcription initiation factor IIB n=1 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A6A4TM01_SCOMX)

HSP 1 Score: 48.1 bits (113), Expect = 8.150e-5
Identity = 26/57 (45.61%), Postives = 36/57 (63.16%), Query Frame = 0 
Query:    1 MDIDKGTVRGTHLIPQLCNKLGVPAFITMAAQNVAEKASELDLVGGVMPSAVAAAAV 57
            +DI    +    L+P+ C+ LG+P  + MAA  +A KA ELDLV G  P +VAAAA+
Sbjct:  316 LDISLDLINPGDLMPRFCSNLGLPKPVRMAANFIARKAVELDLVPGRSPISVAAAAI 372
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111214.919.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L4T7_9PHAE3.210e-1260.71TFIIB-type domain-containing protein n=2 Tax=Ectoc... [more]
A0A835YX77_9STRA5.850e-546.94TFIIB-type domain-containing protein n=1 Tax=Tribo... [more]
A0A8D3A2J0_SCOMX7.940e-545.61Transcription initiation factor IIB n=4 Tax=Scopht... [more]
A0A6A4TM01_SCOMX8.150e-545.61Transcription initiation factor IIB n=1 Tax=Scopht... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.472.10coord: 10..62
e-value: 4.6E-9
score: 38.3
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 43..61
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..42
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 62..62
IPR013150Transcription factor TFIIB, cyclin-like domainPFAMPF00382TFIIBcoord: 14..61
e-value: 5.7E-7
score: 29.5
IPR036915Cyclin-like superfamilySUPERFAMILY47954Cyclin-likecoord: 8..61

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig111214contigH-elongata_contig111214:98..283 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig111214.919.1mRNA_H-elongata_contig111214.919.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig111214 86..283 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig111214.919.1 ID=prot_H-elongata_contig111214.919.1|Name=mRNA_H-elongata_contig111214.919.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp
MDIDKGTVRGTHLIPQLCNKLGVPAFITMAAQNVAEKASELDLVGGVMPS
AVAAAAVLLICS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013150TFIIB_cyclin
IPR036915Cyclin-like_sf