prot_H-elongata_contig111016.906.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig111016.906.1
Unique Nameprot_H-elongata_contig111016.906.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length112
Homology
BLAST of mRNA_H-elongata_contig111016.906.1 vs. uniprot
Match: D7G6X0_ECTSI (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6X0_ECTSI)

HSP 1 Score: 192 bits (489), Expect = 4.390e-61
Identity = 90/103 (87.38%), Postives = 94/103 (91.26%), Query Frame = 0
Query:    1 MEFPGEAEDPYTKSFIDPVWLQQWGLGPENALDYFALSPFYDKSCNNEQCRMQGVDPREGLKNLTGLEFMLQADLPEEMSFLPPGQPAPVGPQPRRLFVIKVQ 103
            M+FPG AEDP  +SFIDPVWLQQWGLGPENALDYFALSPFYDK+CNNEQCRMQGVDPREGL NLTGLEFML  +LP EMSFLPPGQPAP GPQPRRLFVIK Q
Sbjct:    1 MDFPGAAEDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQGVDPREGLLNLTGLEFML-VELPPEMSFLPPGQPAPAGPQPRRLFVIKKQ 102          
BLAST of mRNA_H-elongata_contig111016.906.1 vs. uniprot
Match: A0A6H5KKW4_9PHAE (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKW4_9PHAE)

HSP 1 Score: 190 bits (483), Expect = 1.590e-58
Identity = 89/103 (86.41%), Postives = 93/103 (90.29%), Query Frame = 0
Query:    1 MEFPGEAEDPYTKSFIDPVWLQQWGLGPENALDYFALSPFYDKSCNNEQCRMQGVDPREGLKNLTGLEFMLQADLPEEMSFLPPGQPAPVGPQPRRLFVIKVQ 103
            MEFPG AEDP  +SFIDPVWLQQWGLGP+NALDYFALSPFYDK+CNNEQCRMQ VDPREGL NLTGLEFML  +LP EMSFLPPGQPAP GPQPRRLFVIK Q
Sbjct:    1 MEFPGAAEDPEQRSFIDPVWLQQWGLGPQNALDYFALSPFYDKACNNEQCRMQSVDPREGLLNLTGLEFML-VELPPEMSFLPPGQPAPAGPQPRRLFVIKKQ 102          
BLAST of mRNA_H-elongata_contig111016.906.1 vs. uniprot
Match: A0A835YVL9_9STRA (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVL9_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 9.860e-22
Identity = 52/100 (52.00%), Postives = 68/100 (68.00%), Query Frame = 0
Query:    6 EAEDPYTKSFIDPVWLQQWGLGPENALDYFALSPFYDKSCNNEQCRMQGV-DPREGLKNLTGLEFMLQADLPEEMSFLP-PGQPAPVGPQPRRLFVIKVQ 103
            E ED    SF D +WL+ + LGPE A+DYFALSPFYD++ NNE CRMQG+ D    ++ +TG+E++++ +LP E   LP PG P    PQPR L VIK Q
Sbjct:   14 EIEDQTQLSFQDTMWLRSFYLGPETAIDYFALSPFYDRTSNNELCRMQGLTDHVAAMQTMTGIEYVVE-ELPPETDELPEPGAP----PQPRHLMVIKKQ 108          
BLAST of mRNA_H-elongata_contig111016.906.1 vs. uniprot
Match: M4C4K5_HYAAE (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C4K5_HYAAE)

HSP 1 Score: 79.7 bits (195), Expect = 9.520e-16
Identity = 45/106 (42.45%), Postives = 63/106 (59.43%), Query Frame = 0
Query:    1 MEFPGEAEDPYTKSFIDPVWLQQWGLGPENALDYFALSPFYDKSCNNEQCRMQ--GVDPREGLKNLTGLEFMLQADLPEEMSFLPPGQPAPVGPQPRRLFVIKVQK 104
            ME    A+D Y  SF D VWLQ + L P+  L YFALSPFYD+SCNNE+ +MQ  G+D    LKNL G+E+ L  +  +++              P++L+VI+ Q+
Sbjct:    1 MEVAAHADD-YNASFRDTVWLQSFPLNPQTVLHYFALSPFYDRSCNNERLKMQRLGLDQ---LKNLRGIEYELLPNAAKQL--------------PQQLYVIRKQR 88          
BLAST of mRNA_H-elongata_contig111016.906.1 vs. uniprot
Match: A0A0N7L744_PLAHL (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L744_PLAHL)

HSP 1 Score: 76.6 bits (187), Expect = 2.440e-15
Identity = 43/106 (40.57%), Postives = 62/106 (58.49%), Query Frame = 0
Query:    1 MEFPGEAEDPYTKSFIDPVWLQQWGLGPENALDYFALSPFYDKSCNNEQCRMQ--GVDPREGLKNLTGLEFMLQADLPEEMSFLPPGQPAPVGPQPRRLFVIKVQK 104
            ME  G  +D Y  SF D VWLQ + L  +  L YFALSPFYD+SCNNE+ +MQ  G+D    LKNL G+E+ L  +  +++              P++L++I+ Q+
Sbjct:    1 MEVAGHVDD-YNASFRDTVWLQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQRLGLDQ---LKNLRGVEYELLPNAAKQL--------------PQQLYIIRKQR 88          
BLAST of mRNA_H-elongata_contig111016.906.1 vs. uniprot
Match: D0NQQ4_PHYIT (Mediator of RNA polymerase II transcription subunit 6 n=15 Tax=Peronosporaceae TaxID=4777 RepID=D0NQQ4_PHYIT)

HSP 1 Score: 76.6 bits (187), Expect = 1.130e-14
Identity = 44/106 (41.51%), Postives = 61/106 (57.55%), Query Frame = 0
Query:    1 MEFPGEAEDPYTKSFIDPVWLQQWGLGPENALDYFALSPFYDKSCNNEQCRMQ--GVDPREGLKNLTGLEFMLQADLPEEMSFLPPGQPAPVGPQPRRLFVIKVQK 104
            ME     +D Y  SF D VWLQ + L  +  L YFALSPFYD+SCNNE+ +MQ  G+D    LKNL G+E+ L  +  ++M              P++LF+I+ Q+
Sbjct:    1 MEVSAHVDD-YNASFRDTVWLQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQRLGLDQ---LKNLRGVEYELLPNTAKQM--------------PQQLFIIRKQR 88          
BLAST of mRNA_H-elongata_contig111016.906.1 vs. uniprot
Match: A0A3F2RNL5_9STRA (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RNL5_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.250e-14
Identity = 43/106 (40.57%), Postives = 62/106 (58.49%), Query Frame = 0
Query:    1 MEFPGEAEDPYTKSFIDPVWLQQWGLGPENALDYFALSPFYDKSCNNEQCRMQ--GVDPREGLKNLTGLEFMLQADLPEEMSFLPPGQPAPVGPQPRRLFVIKVQK 104
            ME     +D Y  SF D VWLQ + L  +  L YFALSPFYD+SCNNE+ +MQ  G+D    LKNL G+E+ L ++  +++              P++LF+I+ Q+
Sbjct:    1 MEVSSHVDD-YNASFRDTVWLQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQRLGLDQ---LKNLRGIEYELLSNAAKQL--------------PQQLFIIRKQR 88          
BLAST of mRNA_H-elongata_contig111016.906.1 vs. uniprot
Match: A0A484EGT8_BRELC (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EGT8_BRELC)

HSP 1 Score: 74.7 bits (182), Expect = 1.990e-14
Identity = 41/104 (39.42%), Postives = 60/104 (57.69%), Query Frame = 0
Query:    1 MEFPGEAEDPYTKSFIDPVWLQQWGLGPENALDYFALSPFYDKSCNNEQCRMQGVDPREGLKNLTGLEFMLQADLPEEMSFLPPGQPAPVGPQPRRLFVIKVQK 104
            ME     +D Y  SF D VWLQ + L  +  L YFALSPFYD+SCNNE+ +MQ +   E LKNL G+E+ L  +  +++              P++L++I+ Q+
Sbjct:    1 MEVVAHVDD-YNASFRDTVWLQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQRLG-LEQLKNLRGVEYELLPNAAKQL--------------PQQLYIIRKQR 88          
BLAST of mRNA_H-elongata_contig111016.906.1 vs. uniprot
Match: A0A2D4BKI9_PYTIN (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BKI9_PYTIN)

HSP 1 Score: 75.5 bits (184), Expect = 3.720e-14
Identity = 42/106 (39.62%), Postives = 62/106 (58.49%), Query Frame = 0
Query:    1 MEFPGEAEDPYTKSFIDPVWLQQWGLGPENALDYFALSPFYDKSCNNEQCRMQ--GVDPREGLKNLTGLEFMLQADLPEEMSFLPPGQPAPVGPQPRRLFVIKVQK 104
            ME     +D Y  SF D VWLQ + L  +  L YFALSPFYD+SCNNE+ +MQ  G+D    LKN+ G+E+ L  +L +++              P++LF+++ Q+
Sbjct:    1 MEVVSHVDD-YNASFRDTVWLQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQRLGLDQ---LKNMRGIEYELXPNLAKQL--------------PQQLFLVQKQR 88          
BLAST of mRNA_H-elongata_contig111016.906.1 vs. uniprot
Match: A0A662X429_9STRA (Mediator of RNA polymerase II transcription subunit 6 n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X429_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.130e-13
Identity = 47/106 (44.34%), Postives = 61/106 (57.55%), Query Frame = 0
Query:    1 MEFPGEAEDPYTKSFIDPVWLQQWGLGPENALDYFALSPFYDKSCNNEQCRMQ--GVDPREGLKNLTGLEFMLQADLPEEMSFLPPGQPAPVGPQPRRLFVIKVQK 104
            ME    A+D Y  SF D VWLQ + L  +  L YFALSPFYD+SCNNE+ +MQ  G+D    LKNL G+E+ L   LP     LP           ++LF+I+ Q+
Sbjct:    1 MEVVAHADD-YNASFRDTVWLQSFPLTAQTVLHYFALSPFYDRSCNNERLKMQRLGLDQ---LKNLRGIEYEL---LPNGAKQLP-----------QQLFLIRKQR 88          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111016.906.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6X0_ECTSI4.390e-6187.38Mediator of RNA polymerase II transcription subuni... [more]
A0A6H5KKW4_9PHAE1.590e-5886.41Mediator of RNA polymerase II transcription subuni... [more]
A0A835YVL9_9STRA9.860e-2252.00Mediator of RNA polymerase II transcription subuni... [more]
M4C4K5_HYAAE9.520e-1642.45Mediator of RNA polymerase II transcription subuni... [more]
A0A0N7L744_PLAHL2.440e-1540.57Mediator of RNA polymerase II transcription subuni... [more]
D0NQQ4_PHYIT1.130e-1441.51Mediator of RNA polymerase II transcription subuni... [more]
A0A3F2RNL5_9STRA1.250e-1440.57Mediator of RNA polymerase II transcription subuni... [more]
A0A484EGT8_BRELC1.990e-1439.42Mediator of RNA polymerase II transcription subuni... [more]
A0A2D4BKI9_PYTIN3.720e-1439.62Mediator of RNA polymerase II transcription subuni... [more]
A0A662X429_9STRA1.130e-1344.34Mediator of RNA polymerase II transcription subuni... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007018Mediator complex, subunit Med6PFAMPF04934Med6coord: 14..104
e-value: 4.6E-19
score: 68.5
IPR007018Mediator complex, subunit Med6PANTHERPTHR13104MED-6-RELATEDcoord: 7..104
IPR038566Med6 core domain superfamilyGENE3D3.10.450.580coord: 7..108
e-value: 3.3E-17
score: 64.3
NoneNo IPR availablePANTHERPTHR13104:SF0MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 6coord: 7..104

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig111016contigH-elongata_contig111016:1377..2095 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig111016.906.1mRNA_H-elongata_contig111016.906.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig111016 1377..2095 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig111016.906.1 ID=prot_H-elongata_contig111016.906.1|Name=mRNA_H-elongata_contig111016.906.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp
MEFPGEAEDPYTKSFIDPVWLQQWGLGPENALDYFALSPFYDKSCNNEQC
RMQGVDPREGLKNLTGLEFMLQADLPEEMSFLPPGQPAPVGPQPRRLFVI
KVQKYVRVIRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007018Mediator_Med6
IPR038566Med6_sf