prot_H-elongata_contig110774.888.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig110774.888.1
Unique Nameprot_H-elongata_contig110774.888.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length160
Homology
BLAST of mRNA_H-elongata_contig110774.888.1 vs. uniprot
Match: D8LJ52_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ52_ECTSI)

HSP 1 Score: 246 bits (628), Expect = 5.770e-73
Identity = 128/156 (82.05%), Postives = 146/156 (93.59%), Query Frame = 0
Query:    1 QSVTNLLTSAALFRNMDLALCLNVFGCLACFQGWHRAREERRRTRHGVTYPKVILEWEYIMLCAYVKVLDLLVGLWLXXXXXXXXXEDLDYSERHSVRMLLLSITTVQTLTDIWSVFLGITVALLVSQYLLRKERMSDAAKQAFGEG--GDGDVEV 154
            +S+T+LL SAALFRNMDLALCLNVFGCLACFQGWH+AREERRR RHGVTYPKV+LEW+YIMLC YVK+ D+LVGLWLXXXXXXXXXED DYSERHS+RMLL++ITTVQTLTD+WSVFLGITV+LLVSQYLLRKE+ +DAA+ AFG+G  GD DVE+
Sbjct:  713 KSLTDLLVSAALFRNMDLALCLNVFGCLACFQGWHQAREERRRARHGVTYPKVVLEWDYIMLCGYVKIFDILVGLWLXXXXXXXXXEDRDYSERHSIRMLLVAITTVQTLTDVWSVFLGITVSLLVSQYLLRKEKSADAARNAFGDGQGGDKDVEI 868          
BLAST of mRNA_H-elongata_contig110774.888.1 vs. uniprot
Match: A0A6H5KXN3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXN3_9PHAE)

HSP 1 Score: 191 bits (485), Expect = 2.590e-59
Identity = 99/113 (87.61%), Postives = 107/113 (94.69%), Query Frame = 0
Query:    2 SVTNLLTSAALFRNMDLALCLNVFGCLACFQGWHRAREERRRTRHGVTYPKVILEWEYIMLCAYVKVLDLLVGLWLXXXXXXXXXEDLDYSERHSVRMLLLSITTVQTLTDIW 114
            S+T LL SAALFRNMDLALCLNVFGCLACFQGWH+AREERRR RHGVTYPKVILEW+YIMLC YVK+ DLLVGLWLXXXXXXXXXED DYSERHS+RMLL++ITTVQTLTD+W
Sbjct:   73 SLTELLVSAALFRNMDLALCLNVFGCLACFQGWHQAREERRRARHGVTYPKVILEWDYIMLCGYVKIFDLLVGLWLXXXXXXXXXEDRDYSERHSIRMLLVAITTVQTLTDVW 185          
BLAST of mRNA_H-elongata_contig110774.888.1 vs. uniprot
Match: A0A835YPD1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPD1_9STRA)

HSP 1 Score: 138 bits (347), Expect = 8.960e-35
Identity = 66/130 (50.77%), Postives = 88/130 (67.69%), Query Frame = 0
Query:    9 SAALFRNMDLALCLNVFGCLACFQGWHRAREERRRTRHGVTYPKVILEWEYIMLCAYVKVLDLLVGLWLXXXXXXXXXEDLDYSERHSVRMLLLSITTVQTLTDIWSVFLGITVALLVSQYLLRKERMSD 138
            + ALF +MDLAL L VFGC+ C + WH  RE RR  +HG   PKV+L+WEY+MLC  +K+LDLL G+W+          + +YSER +V+ +L  I  VQ +TDIWSVFLG  + LLVSQYLLR+ +  +
Sbjct:  571 TGALFSHMDLALSLEVFGCMVCARKWHEMREARRTQKHGTHVPKVVLDWEYVMLCVKLKLLDLLFGVWVWAGIGWSFSPEREYSERWNVKTMLSWIVFVQFMTDIWSVFLGAVLCLLVSQYLLRRAKRKE 700          
BLAST of mRNA_H-elongata_contig110774.888.1 vs. uniprot
Match: A0A6H5KY58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY58_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 2.740e-7
Identity = 29/40 (72.50%), Postives = 35/40 (87.50%), Query Frame = 0
Query:  115 SVFLGITVALLVSQYLLRKERMSDAAKQAFGEGGDGDVEV 154
            SVFLGITV+LLVSQYLLRKE+ +DAA+ AFG+G  GD +V
Sbjct:  414 SVFLGITVSLLVSQYLLRKEKSADAARNAFGDGQGGDKDV 453          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110774.888.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LJ52_ECTSI5.770e-7382.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KXN3_9PHAE2.590e-5987.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YPD1_9STRA8.960e-3550.77Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5KY58_9PHAE2.740e-772.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 99..126
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 127..159
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..34
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 35..54
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 55..79
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 80..98
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availableTMHMMTMhelixcoord: 57..79
NoneNo IPR availableTMHMMTMhelixcoord: 15..37
NoneNo IPR availableTMHMMTMhelixcoord: 109..131

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110774contigH-elongata_contig110774:102..1645 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110774.888.1mRNA_H-elongata_contig110774.888.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig110774 102..1645 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig110774.888.1 ID=prot_H-elongata_contig110774.888.1|Name=mRNA_H-elongata_contig110774.888.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=160bp
QSVTNLLTSAALFRNMDLALCLNVFGCLACFQGWHRAREERRRTRHGVTY
PKVILEWEYIMLCAYVKVLDLLVGLWLWIGLGWSWSEDLDYSERHSVRML
LLSITTVQTLTDIWSVFLGITVALLVSQYLLRKERMSDAAKQAFGEGGDG
DVEVGTLYF*
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