prot_H-elongata_contig110554.873.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig110554.873.1
Unique Nameprot_H-elongata_contig110554.873.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length102
Homology
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BLAST of mRNA_H-elongata_contig110554.873.1 vs. uniprot
Match: D7G6G9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6G9_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 2.100e-39
Identity = 76/100 (76.00%), Postives = 86/100 (86.00%), Query Frame = 0 
Query:    1 GASRAGLAWDRGVSLVTVSAWQSMAALGTGFLMSRFWRRGRRSEPSALSDADRTRRNRYLMVFAAAHLAGVGLEYYGYGVIGPIAAEVLRSTETALFCLL 100
            GA+ AG  W +GVS+VTVSAWQ++AALG GFLMSRFWRR RR E  ALSDA+RTRRN++L+VFAAAHLAG GLEY+GYGVIG  AAEVLRSTE A FCLL
Sbjct:  368 GAAVAG--WGKGVSVVTVSAWQTLAALGVGFLMSRFWRRFRRPEVRALSDAERTRRNKFLLVFAAAHLAGTGLEYHGYGVIGAAAAEVLRSTEAAFFCLL 465
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BLAST of mRNA_H-elongata_contig110554.873.1 vs. uniprot
Match: A0A6H5L6Z7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Z7_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 2.580e-38
Identity = 71/92 (77.17%), Postives = 80/92 (86.96%), Query Frame = 0 
Query:    9 WDRGVSLVTVSAWQSMAALGTGFLMSRFWRRGRRSEPSALSDADRTRRNRYLMVFAAAHLAGVGLEYYGYGVIGPIAAEVLRSTETALFCLL 100
            W +GVS+VTVSAWQ++AALG GFLMSRFWRR RR E  ALSD +RTRRN++L+VFAAAHLAG GLEY+GYGVIG  AAEVLRSTE A FCLL
Sbjct:  344 WGKGVSVVTVSAWQTLAALGFGFLMSRFWRRFRRPEVRALSDGERTRRNKFLLVFAAAHLAGTGLEYHGYGVIGAAAAEVLRSTEAACFCLL 435
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110554.873.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6G9_ECTSI2.100e-3976.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6Z7_9PHAE2.580e-3877.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..38
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 59..78
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 79..101
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 39..58
NoneNo IPR availableTMHMMTMhelixcoord: 59..81
NoneNo IPR availableTMHMMTMhelixcoord: 15..37

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110554contigH-elongata_contig110554:628..1478 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110554.873.1mRNA_H-elongata_contig110554.873.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig110554 628..1478 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig110554.873.1 ID=prot_H-elongata_contig110554.873.1|Name=mRNA_H-elongata_contig110554.873.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
GASRAGLAWDRGVSLVTVSAWQSMAALGTGFLMSRFWRRGRRSEPSALSD
ADRTRRNRYLMVFAAAHLAGVGLEYYGYGVIGPIAAEVLRSTETALFCLL
R*
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