prot_H-elongata_contig110508.867.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig110508.867.1
Unique Nameprot_H-elongata_contig110508.867.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length77
Homology
BLAST of mRNA_H-elongata_contig110508.867.1 vs. uniprot
Match: D8LGU0_ECTSI (Polyribonucleotide nucleotidyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGU0_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 7.240e-35
Identity = 69/72 (95.83%), Postives = 69/72 (95.83%), Query Frame = 0
Query:    1 RASDKETLVSRLMDRPLRPAMHPGWKHETQLLSWVLSYDNKHPPVPLAITAASAALALSNVPLVRAIAGVTV 72
            RASDKETLVSRLMDRPLRPAMHPGW HETQLLSWVLSYD  HPPVPLAITAASAALALSNVPLVRAIAGVTV
Sbjct:  101 RASDKETLVSRLMDRPLRPAMHPGWFHETQLLSWVLSYDTVHPPVPLAITAASAALALSNVPLVRAIAGVTV 172          
BLAST of mRNA_H-elongata_contig110508.867.1 vs. uniprot
Match: A0A835ZC49_9STRA (Polyribonucleotide nucleotidyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC49_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.620e-23
Identity = 50/72 (69.44%), Postives = 60/72 (83.33%), Query Frame = 0
Query:    1 RASDKETLVSRLMDRPLRPAMHPGWKHETQLLSWVLSYDNKHPPVPLAITAASAALALSNVPLVRAIAGVTV 72
            RAS+KE LVSRL+DRPLRP +  GW HETQL++WV+SYD   PP PLAIT+ASA+L LS VP+ RA+AGVTV
Sbjct:   44 RASEKEVLVSRLIDRPLRPMIAQGWTHETQLITWVVSYDGSRPPEPLAITSASASLCLSQVPMRRAVAGVTV 115          
BLAST of mRNA_H-elongata_contig110508.867.1 vs. uniprot
Match: A0A2P6TLY3_CHLSO (Polyribonucleotide nucleotidyltransferase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TLY3_CHLSO)

HSP 1 Score: 95.5 bits (236), Expect = 3.250e-21
Identity = 47/77 (61.04%), Postives = 57/77 (74.03%), Query Frame = 0
Query:    1 RASDKETLVSRLMDRPLRPAMHPGWKHETQLLSWVLSYDNKHPPVPLAITAASAALALSNVPLVRAIAGVTVSRAKG 77
            R  D E LVSRL+DRP+RP +  GW H TQ+L+WVLSYD +H P PLAITAA AALA+S+VPL +A+AG  V    G
Sbjct:  178 RPKDHEVLVSRLIDRPIRPMIQSGWTHSTQVLTWVLSYDGQHSPEPLAITAAGAALAISDVPLSKAVAGARVGLLPG 254          
BLAST of mRNA_H-elongata_contig110508.867.1 vs. uniprot
Match: A0A5J4Y9P8_9CHLO (Polynucleotide phosphorylase n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y9P8_9CHLO)

HSP 1 Score: 91.7 bits (226), Expect = 2.020e-20
Identity = 45/72 (62.50%), Postives = 56/72 (77.78%), Query Frame = 0
Query:    1 RASDKETLVSRLMDRPLRPAMHPGWKHETQLLSWVLSYDNKHPPVPLAITAASAALALSNVPLVRAIAGVTV 72
            R+ + E LVSRL DRP+RP    GW  ETQ+L+WVLSYD +  P PLAITAASAALA+S++PL +A+AGV V
Sbjct:   84 RSRESEVLVSRLTDRPIRPMFEKGWNRETQVLTWVLSYDGEQSPEPLAITAASAALAVSDIPLKKAVAGVRV 155          
BLAST of mRNA_H-elongata_contig110508.867.1 vs. uniprot
Match: A0A2P6VEN8_9CHLO (Polyribonucleotide nucleotidyltransferase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VEN8_9CHLO)

HSP 1 Score: 93.2 bits (230), Expect = 2.100e-20
Identity = 45/74 (60.81%), Postives = 56/74 (75.68%), Query Frame = 0
Query:    4 DKETLVSRLMDRPLRPAMHPGWKHETQLLSWVLSYDNKHPPVPLAITAASAALALSNVPLVRAIAGVTVSRAKG 77
            D E LV+RL+DRP+RP +  GW H TQ+L+WV+SYD +H P PLAITAA AALA+S+VPL RA+AG  V    G
Sbjct:   55 DHEVLVARLIDRPIRPMIQSGWTHSTQVLTWVMSYDGEHSPEPLAITAAGAALAISDVPLRRAVAGARVGLLPG 128          
BLAST of mRNA_H-elongata_contig110508.867.1 vs. uniprot
Match: A0A2R6X203_MARPO (Polyribonucleotide nucleotidyltransferase n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6X203_MARPO)

HSP 1 Score: 91.7 bits (226), Expect = 7.300e-20
Identity = 46/77 (59.74%), Postives = 56/77 (72.73%), Query Frame = 0
Query:    1 RASDKETLVSRLMDRPLRPAMHPGWKHETQLLSWVLSYDNKHPPVPLAITAASAALALSNVPLVRAIAGVTVSRAKG 77
            R  D E LV RL+DRP+RP +  G+ HETQ+LSWVLSYD  H P PLAITAA AALALS++P+ + +AGV V    G
Sbjct:  182 RTRDHEVLVCRLIDRPIRPMIAKGFNHETQILSWVLSYDGLHTPEPLAITAAGAALALSDIPIAKPVAGVRVGLIDG 258          
BLAST of mRNA_H-elongata_contig110508.867.1 vs. uniprot
Match: A0A176WHW8_MARPO (Endopeptidase Clp n=1 Tax=Marchantia polymorpha subsp. ruderalis TaxID=1480154 RepID=A0A176WHW8_MARPO)

HSP 1 Score: 91.7 bits (226), Expect = 7.370e-20
Identity = 46/77 (59.74%), Postives = 56/77 (72.73%), Query Frame = 0
Query:    1 RASDKETLVSRLMDRPLRPAMHPGWKHETQLLSWVLSYDNKHPPVPLAITAASAALALSNVPLVRAIAGVTVSRAKG 77
            R  D E LV RL+DRP+RP +  G+ HETQ+LSWVLSYD  H P PLAITAA AALALS++P+ + +AGV V    G
Sbjct:  598 RTRDHEVLVCRLIDRPIRPMIAKGFNHETQILSWVLSYDGLHTPEPLAITAAGAALALSDIPIAKPVAGVRVGLIDG 674          
BLAST of mRNA_H-elongata_contig110508.867.1 vs. uniprot
Match: D8UFR1_VOLCA (Polyribonucleotide nucleotidyltransferase n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8UFR1_VOLCA)

HSP 1 Score: 90.5 bits (223), Expect = 1.860e-19
Identity = 45/72 (62.50%), Postives = 55/72 (76.39%), Query Frame = 0
Query:    1 RASDKETLVSRLMDRPLRPAMHPGWKHETQLLSWVLSYDNKHPPVPLAITAASAALALSNVPLVRAIAGVTV 72
            R  D E LVSRL+DRPLRP    GW +ETQ+L WVLSYD  H P P+AITAA+AAL +S++PL +A+AGV V
Sbjct:   52 RPRDSEVLVSRLVDRPLRPMFGKGWANETQVLEWVLSYDGIHNPEPIAITAAAAALLISDIPLKKAVAGVRV 123          
BLAST of mRNA_H-elongata_contig110508.867.1 vs. uniprot
Match: I0YP49_COCSC (Polyribonucleotide nucleotidyltransferase n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YP49_COCSC)

HSP 1 Score: 90.1 bits (222), Expect = 2.550e-19
Identity = 45/77 (58.44%), Postives = 58/77 (75.32%), Query Frame = 0
Query:    1 RASDKETLVSRLMDRPLRPAMHPGWKHETQLLSWVLSYDNKHPPVPLAITAASAALALSNVPLVRAIAGVTVSRAKG 77
            R  D E L +RL+DRPLRP   PGW ++TQ+L WVLSYD  + P PLAITAA+AALA+S++PL +A+AGV V   +G
Sbjct:   52 RPKDGEVLTARLVDRPLRPMFAPGWANDTQVLIWVLSYDGINTPEPLAITAAAAALAISDIPLQKAVAGVRVGLLEG 128          
BLAST of mRNA_H-elongata_contig110508.867.1 vs. uniprot
Match: A0A8J9RF41_9CHLO (Probable polyribonucleotide nucleotidyltransferase n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RF41_9CHLO)

HSP 1 Score: 90.1 bits (222), Expect = 2.550e-19
Identity = 45/77 (58.44%), Postives = 58/77 (75.32%), Query Frame = 0
Query:    1 RASDKETLVSRLMDRPLRPAMHPGWKHETQLLSWVLSYDNKHPPVPLAITAASAALALSNVPLVRAIAGVTVSRAKG 77
            R  D E L +RL+DRPLRP   PGW ++TQ+L WVLSYD  + P PLAITAA+AALA+S++PL +A+AGV V   +G
Sbjct:  123 RPKDGEVLTARLVDRPLRPMFAPGWTNDTQVLIWVLSYDGINTPEPLAITAAAAALAISDIPLQKAVAGVRVGLLEG 199          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110508.867.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGU0_ECTSI7.240e-3595.83Polyribonucleotide nucleotidyltransferase n=2 Tax=... [more]
A0A835ZC49_9STRA1.620e-2369.44Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
A0A2P6TLY3_CHLSO3.250e-2161.04Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
A0A5J4Y9P8_9CHLO2.020e-2062.50Polynucleotide phosphorylase n=1 Tax=Trebouxia sp.... [more]
A0A2P6VEN8_9CHLO2.100e-2060.81Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
A0A2R6X203_MARPO7.300e-2059.74Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
A0A176WHW8_MARPO7.370e-2059.74Endopeptidase Clp n=1 Tax=Marchantia polymorpha su... [more]
D8UFR1_VOLCA1.860e-1962.50Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
I0YP49_COCSC2.550e-1958.44Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
A0A8J9RF41_9CHLO2.550e-1958.44Probable polyribonucleotide nucleotidyltransferase... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027408PNPase/RNase PH domain superfamilyGENE3D3.30.230.70coord: 1..77
e-value: 4.8E-21
score: 77.1
IPR001247Exoribonuclease, phosphorolytic domain 1PFAMPF01138RNase_PHcoord: 1..62
e-value: 9.8E-7
score: 29.3
IPR012162Polyribonucleotide nucleotidyltransferasePANTHERPTHR11252POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASEcoord: 1..75
NoneNo IPR availablePANTHERPTHR11252:SF0POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE 1, MITOCHONDRIALcoord: 1..75
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILY54211Ribosomal protein S5 domain 2-likecoord: 2..62

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110508contigH-elongata_contig110508:1564..1794 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110508.867.1mRNA_H-elongata_contig110508.867.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig110508 1564..1794 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig110508.867.1 ID=prot_H-elongata_contig110508.867.1|Name=mRNA_H-elongata_contig110508.867.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
RASDKETLVSRLMDRPLRPAMHPGWKHETQLLSWVLSYDNKHPPVPLAIT
AASAALALSNVPLVRAIAGVTVSRAKG
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027408PNPase/RNase_PH_dom_sf
IPR001247ExoRNase_PH_dom1
IPR012162PNPase
IPR020568Ribosomal_S5_D2-typ_fold