prot_H-elongata_contig110410.859.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig110410.859.1
Unique Nameprot_H-elongata_contig110410.859.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length88
Homology
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BLAST of mRNA_H-elongata_contig110410.859.1 vs. uniprot
Match: A0A6H5JS12_9PHAE (EH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS12_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 4.490e-36
Identity = 64/84 (76.19%), Postives = 72/84 (85.71%), Query Frame = 0 
Query:    1 PALFQKKPLQGSGVTGRVARGILRIADWDESGDLGLDEFALAMYLCRRYRLGEGVPSMLEASMIPPRLREARGCQDDGPSPAFP 84
            P L  ++PLQGSGV  R+AR IL+IADW   GDLGLDEF+LAMYLCRR RLGEGVPSMLEA MIPP LREARGC+D+GPSPA+P
Sbjct:  337 PCLVAREPLQGSGVNVRMARAILQIADWQHRGDLGLDEFSLAMYLCRRQRLGEGVPSMLEAWMIPPSLREARGCRDNGPSPAYP 420
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BLAST of mRNA_H-elongata_contig110410.859.1 vs. uniprot
Match: A0A7S2F4E5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F4E5_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 5.080e-7
Identity = 25/61 (40.98%), Postives = 40/61 (65.57%), Query Frame = 0 
Query:    6 KKPLQGSGVTGRVARGILRIADWDESGDLGLDEFALAMYLCRRYRLGEGVPSMLEASMIPP 66
            ++ L  +GV   V R I  ++D D+ G L +DEFA+AMYLCR+ + G+ +P  L + ++PP
Sbjct:  161 REALMATGVAQGVLRCIWELSDIDKDGQLDMDEFAVAMYLCRQAQRGQPMPQALPSQVVPP 221
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BLAST of mRNA_H-elongata_contig110410.859.1 vs. uniprot
Match: A0A4C1XRS6_EUMVA (Intersectin-1 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1XRS6_EUMVA)

HSP 1 Score: 51.2 bits (121), Expect = 1.920e-5
Identity = 24/48 (50.00%), Postives = 29/48 (60.42%), Query Frame = 0 
Query:   22 ILRIADWDESGDLGLDEFALAMYLCRRYRLGEGVPSMLEASMIPPRLR 69
            I  +AD D  G LG +EF LAMYLC +   GE VPS L   ++PP  R
Sbjct:  418 IWALADLDNDGKLGCEEFVLAMYLCEKATQGEPVPSKLPPELVPPTFR 465
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110410.859.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JS12_9PHAE4.490e-3676.19EH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A7S2F4E5_9STRA5.080e-740.98Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A4C1XRS6_EUMVA1.920e-550.00Intersectin-1 n=1 Tax=Eumeta variegata TaxID=15154... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.238.10coord: 5..76
e-value: 2.0E-10
score: 42.3
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 9..68

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110410contigH-elongata_contig110410:1391..1965 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110410.859.1mRNA_H-elongata_contig110410.859.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig110410 1391..1965 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig110410.859.1 ID=prot_H-elongata_contig110410.859.1|Name=mRNA_H-elongata_contig110410.859.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
PALFQKKPLQGSGVTGRVARGILRIADWDESGDLGLDEFALAMYLCRRYR
LGEGVPSMLEASMIPPRLREARGCQDDGPSPAFPPRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011992EF-hand-dom_pair