prot_H-elongata_contig110407.858.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig110407.858.1
Unique Nameprot_H-elongata_contig110407.858.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length82
Homology
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BLAST of mRNA_H-elongata_contig110407.858.1 vs. uniprot
Match: D8LRN0_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRN0_ECTSI)

HSP 1 Score: 50.4 bits (119), Expect = 2.790e-5
Identity = 34/62 (54.84%), Postives = 38/62 (61.29%), Query Frame = 0 
Query:    1 CTDDCSACGGSGCGS-----FGTTCCTSDI---GDACSATGEAPCYIDGDSSSPTPS-TTPT 53
            C  DC  CGGSGC S      G  CCT +I   G  CSATG APC++DGDS   TPS +TPT
Sbjct:   35 CVSDCGTCGGSGCSSRESGLTGDDCCTKNILKQGAPCSATGHAPCFLDGDS---TPSKSTPT 93
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110407.858.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRN0_ECTSI2.790e-554.84Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110407contigH-elongata_contig110407:663..2029 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110407.858.1mRNA_H-elongata_contig110407.858.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig110407 661..2029 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig110407.858.1 ID=prot_H-elongata_contig110407.858.1|Name=mRNA_H-elongata_contig110407.858.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp
CTDDCSACGGSGCGSFGTTCCTSDIGDACSATGEAPCYIDGDSSSPTPST
TPTGSTCSNGLDGVESSNGKYCCTDDCSACGG
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