prot_H-elongata_contig110371.856.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig110371.856.1
Unique Nameprot_H-elongata_contig110371.856.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length71
Homology
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BLAST of mRNA_H-elongata_contig110371.856.1 vs. uniprot
Match: A0A835YVQ8_9STRA (GH26 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVQ8_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 2.810e-6
Identity = 25/53 (47.17%), Postives = 33/53 (62.26%), Query Frame = 0 
Query:   13 SNVCCHEDC--GECGGSGCKTRPGGKYSCCTQRIMEANVACDEAGSAPCVLIP 63
            + VCC +D   G CGGS CKT PGG Y CC   ++  N++C   G APC++ P
Sbjct:  521 NQVCCPKDTCGGVCGGSTCKTLPGGYYECCLNGVLATNLSCANTG-APCIIPP 572
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BLAST of mRNA_H-elongata_contig110371.856.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 9.600e-6
Identity = 26/58 (44.83%), Postives = 32/58 (55.17%), Query Frame = 0 
Query:    6 FGGISDESNVCCHEDCGECGGSGCKTRPGG--KYSCCTQRIMEANVACDEAGSAPCVL 61
            F G+  E N+CCH DCG CGGS C+ R  G     CC   I +    C E  SAPC++
Sbjct:   16 FVGVQSE-NICCHVDCGTCGGSECRRRGKGLGAADCCRNYISKNGALCSENLSAPCIM 72
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110371.856.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YVQ8_9STRA2.810e-647.17GH26 domain-containing protein n=1 Tax=Tribonema m... [more]
D8LRM4_ECTSI9.600e-644.83Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110371contigH-elongata_contig110371:881..1093 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110371.856.1mRNA_H-elongata_contig110371.856.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig110371 881..1093 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig110371.856.1 ID=prot_H-elongata_contig110371.856.1|Name=mRNA_H-elongata_contig110371.856.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
MTCSDFGGISDESNVCCHEDCGECGGSGCKTRPGGKYSCCTQRIMEANVA
CDEAGSAPCVLIPMSPTPVTE
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