prot_H-elongata_contig11037.855.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig11037.855.1
Unique Nameprot_H-elongata_contig11037.855.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length251
Homology
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BLAST of mRNA_H-elongata_contig11037.855.1 vs. uniprot
Match: D8LR74_ECTSI (Vacuolar protein 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR74_ECTSI)

HSP 1 Score: 311 bits (798), Expect = 6.590e-94
Identity = 164/268 (61.19%), Postives = 202/268 (75.37%), Query Frame = 0 
Query:    1 MFRDGVLWGLSTMSRSNDVIIARLCSVALCNLSCKYWKDIATSNSIKAVYYFSRSDDEAVMGAGVKTLHNVLLRAQHLDGVEHIFASAVPLAGRALEHISKDVRLVGLRLTHLISTTTTSRETAIQHGLMKRVDVKDFVSDEPLCHSFCCALERFALDPATRRSVLDSGCIISFPALGAVSPRILECLTRFLYIVSCSPEHVAALVLEHDCVKVAAAV------------VDQRCADGTGSP---------DGTRDMCAALLFNLSTQ 247
            MF+DGV+WGL+ MSRSNDV IA+LCSVALCNLSC+YWK+IA SN ++AVY  +RS DEAVM AG+K LHNVLLRAQHL+GV HIF+  VP+A RAL H SK++RLVG+RLT+L+ST   +R+TA+ + +++RV+V DF SDEPL +SFCCALERFALDPATR SVL SGCI +F AL A+S RI+  L +F+Y VSCSPE V +LVLEHD +KV AAV            V+ R   G GS          DG ++ CAALLFN+STQ
Sbjct:  771 MFKDGVVWGLAAMSRSNDVTIAKLCSVALCNLSCEYWKEIAMSNCMQAVYGLARSSDEAVMSAGMKALHNVLLRAQHLEGVGHIFSGTVPIARRALMHKSKEIRLVGVRLTNLVSTALVARQTAMLYRIVERVNVGDFDSDEPLSYSFCCALERFALDPATRSSVLHSGCIDNFTALCAMSGRIMSRLAQFMYSVSCSPELVPSLVLEHDGMKVIAAVLEPVVQEEEDGSVEGRQGGGAGSXGGEDRKESLDGAKETCAALLFNMSTQ 1038
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BLAST of mRNA_H-elongata_contig11037.855.1 vs. uniprot
Match: A0A6H5KQD4_9PHAE (Vacuolar protein 8 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD4_9PHAE)

HSP 1 Score: 301 bits (770), Expect = 4.110e-90
Identity = 156/268 (58.21%), Postives = 197/268 (73.51%), Query Frame = 0 
Query:    1 MFRDGVLWGLSTMSRSNDVIIARLCSVALCNLSCKYWKDIATSNSIKAVYYFSRSDDEAVMGAGVKTLHNVLLRAQHLDGVEHIFASAVPLAGRALEHISKDVRLVGLRLTHLISTTTTSRETAIQHGLMKRVDVKDFVSDEPLCHSFCCALERFALDPATRRSVLDSGCIISFPALGAVSPRILECLTRFLYIVSCSPEHVAALVLEHDCVKVAAAVVDQRCADGTG---------------------SPDGTRDMCAALLFNLSTQ 247
            MF+DGV+WGL+ MSRS DV IA+LCSVALCNLSC+YWK+I  SN ++AVY  +RS D AVM AG+K LHNVLLRAQHL+GV HIF+  VP+A RAL H SK++RLVG+RLT+L+ST + +R+TA+ + +++RV+V DF SDEPL +SFCCALERFALDPATR +VL SGC+ +F AL A+S RI+  L  F+Y VSCSPE VA+LVLEHD +KV A V++    +  G                     S DG +  CAALLFN+STQ
Sbjct:  501 MFKDGVVWGLAAMSRSKDVTIAKLCSVALCNLSCEYWKEITMSNCMQAVYGLARSSDAAVMSAGMKALHNVLLRAQHLEGVGHIFSGTVPIARRALMHESKEIRLVGVRLTNLVSTASVARQTAMLYRIVERVNVGDFDSDEPLSYSFCCALERFALDPATRSAVLHSGCVNNFTALCAMSGRIMSRLAYFMYCVSCSPELVASLVLEHDGMKVIAVVLELGSQEDEGGAVEGGQGGGAGSRVGEGRKESLDGAKATCAALLFNMSTQ 768
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11037.855.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LR74_ECTSI6.590e-9461.19Vacuolar protein 8 n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5KQD4_9PHAE4.110e-9058.21Vacuolar protein 8 n=1 Tax=Ectocarpus sp. CCAP 131... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 4..250
e-value: 2.1E-6
score: 28.6
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 7..220

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11037contigH-elongata_contig11037:5643..7866 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11037.855.1mRNA_H-elongata_contig11037.855.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig11037 2676..8650 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig11037.855.1 ID=prot_H-elongata_contig11037.855.1|Name=mRNA_H-elongata_contig11037.855.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=251bp
MFRDGVLWGLSTMSRSNDVIIARLCSVALCNLSCKYWKDIATSNSIKAVY
YFSRSDDEAVMGAGVKTLHNVLLRAQHLDGVEHIFASAVPLAGRALEHIS
KDVRLVGLRLTHLISTTTTSRETAIQHGLMKRVDVKDFVSDEPLCHSFCC
ALERFALDPATRRSVLDSGCIISFPALGAVSPRILECLTRFLYIVSCSPE
HVAALVLEHDCVKVAAAVVDQRCADGTGSPDGTRDMCAALLFNLSTQARY
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR016024ARM-type_fold