prot_H-elongata_contig110065.823.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig110065.823.1
Unique Nameprot_H-elongata_contig110065.823.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length218
Homology
BLAST of mRNA_H-elongata_contig110065.823.1 vs. uniprot
Match: A0A6H5JRV1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRV1_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.410e-14
Identity = 45/92 (48.91%), Postives = 62/92 (67.39%), Query Frame = 0
Query:   61 TLGSPTEGNRGGGTNLSAWVDADYGTCPDTRRSVSGGAVMMASGAISWFSRVQKVTAAASSESEYVALAEMVNELRFLRQVKDFMIPQSTSP 152
            +LG   +  R  G +L A+VDADY +    RRSVSGG VM A GAI+WFS+ QK    +++++EYVA+A+M  E+ FLRQV  FM+P+   P
Sbjct:  778 SLGISFQRGRISGLSLIAFVDADYVSRAANRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEMLFLRQVWRFMLPKELRP 869          
BLAST of mRNA_H-elongata_contig110065.823.1 vs. uniprot
Match: A0A6H5JTT9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT9_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 2.160e-14
Identity = 38/80 (47.50%), Postives = 55/80 (68.75%), Query Frame = 0
Query:   73 GTNLSAWVDADYGTCPDTRRSVSGGAVMMASGAISWFSRVQKVTAAASSESEYVALAEMVNELRFLRQVKDFMIPQSTSP 152
            G ++  +VDADY +    RRSVSGG VM   G ++WFSR QK    +++E+EYVA+A+++ E+ FLRQV  FM+P +  P
Sbjct:   12 GMSMQVFVDADYASKAADRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMP 91          
BLAST of mRNA_H-elongata_contig110065.823.1 vs. uniprot
Match: A0A6H5KIL0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIL0_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 2.660e-14
Identity = 60/167 (35.93%), Postives = 88/167 (52.69%), Query Frame = 0
Query:    1 MAERFGVTKTSIIPSVSGGRALPKS----DSPQTDAEVEEMRQIPYREIVGTLI-----KRYNIYGAL------GTLGSPTEGNRGGGTNLSAWVDADYGTCPDTRRSVSGGAVMMASGAISWFSRVQKVTAAASSESEYVALAEMVNELRFLRQVKDFMIPQSTSP 152
            + ER+GV          GG  LP +    D    +  VE     P+R +VG+L+      R +I  ++       + G   +     G +L  +VDADY +    RRSVSGG VM A GAI+WFS+ QK    +++++EYVA+A+M  E+ FLRQV  FM+P+   P
Sbjct:  832 LGERYGVEW-------GGGIPLPTTWKLWDFDADEPSVEH----PFRALVGSLLWIALLTRPDIANSVRAVARTSSFGISFQRGTVSGFSLITFVDADYASVAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFMLPKELRP 987          
BLAST of mRNA_H-elongata_contig110065.823.1 vs. uniprot
Match: A0A6H5K592_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K592_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 3.650e-14
Identity = 49/103 (47.57%), Postives = 66/103 (64.08%), Query Frame = 0
Query:   53 YNIYG-ALGTLGSPTEGNRG--GGTNLSAWVDADYGTCPDTRRSVSGGAVMMASGAISWFSRVQKVTAAASSESEYVALAEMVNELRFLRQVKDFMIPQSTSP 152
            Y+I+G AL T        RG   G +L A+VDADY +    RRSVSGG VM A GAI+WFS+ QK    +++++EYVA+ +M  E+ FLRQV  FM+P+   P
Sbjct: 1023 YSIFGYALRTSSLGISFQRGTVSGFSLIAFVDADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCMTLSTTQAEYVAMVDMGKEILFLRQVWPFMLPKELRP 1125          
BLAST of mRNA_H-elongata_contig110065.823.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 9.280e-14
Identity = 38/80 (47.50%), Postives = 56/80 (70.00%), Query Frame = 0
Query:   73 GTNLSAWVDADYGTCPDTRRSVSGGAVMMASGAISWFSRVQKVTAAASSESEYVALAEMVNELRFLRQVKDFMIPQSTSP 152
            G ++  +VDADY +    RRSVSGG VM   G ++WFSR QK    +++E+EYVA+A+++ E+ FLRQV  FM+P ++ P
Sbjct:  219 GMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDASMP 298          
BLAST of mRNA_H-elongata_contig110065.823.1 vs. uniprot
Match: A0A6H5JWA6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA6_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.290e-13
Identity = 42/80 (52.50%), Postives = 55/80 (68.75%), Query Frame = 0
Query:   73 GTNLSAWVDADYGTCPDTRRSVSGGAVMMASGAISWFSRVQKVTAAASSESEYVALAEMVNELRFLRQVKDFMIPQSTSP 152
            G  L A+VDADY +    RRSVSGG VM A GAI+WFS+ Q     ++++SEYVA+A+M  E+ FLRQV  FM+P+   P
Sbjct:  598 GFTLIAFVDADYASRAADRRSVSGGVVMCAGGAIAWFSKTQTCVTLSTTQSEYVAMADMGKEILFLRQVWRFMLPKELRP 677          
BLAST of mRNA_H-elongata_contig110065.823.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.610e-13
Identity = 38/80 (47.50%), Postives = 55/80 (68.75%), Query Frame = 0
Query:   73 GTNLSAWVDADYGTCPDTRRSVSGGAVMMASGAISWFSRVQKVTAAASSESEYVALAEMVNELRFLRQVKDFMIPQSTSP 152
            G ++  +VDADY +    RRSVSGG VM   G ++WFSR QK    +++E+EYVA+A+++ E+ FLRQV  FM+P +  P
Sbjct:  164 GMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMP 243          
BLAST of mRNA_H-elongata_contig110065.823.1 vs. uniprot
Match: A0A6H5K3H6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H6_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 1.660e-13
Identity = 39/83 (46.99%), Postives = 57/83 (68.67%), Query Frame = 0
Query:   71 GGGTNLSAWVDADYGTCPDTRRSVSGGAVMMASGAISWFSRVQKVTAAASSESEYVALAEMVNELRFLRQVKDFMIPQSTSPS 153
            G G ++  +VDADY +    RRSVSGG VM   G ++WFSR QK    +++E+ YVA+A+++ E+ FLRQV  FM+P + SP+
Sbjct:  136 GTGMSMQVFVDADYASKAADRRSVSGGLVMYGGGCVTWFSRTQKFVTLSTTEAAYVAIADVLKEVLFLRQVWRFMLPDAVSPA 218          
BLAST of mRNA_H-elongata_contig110065.823.1 vs. uniprot
Match: A0A6H5K7P1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7P1_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 2.350e-13
Identity = 39/80 (48.75%), Postives = 56/80 (70.00%), Query Frame = 0
Query:   73 GTNLSAWVDADYGTCPDTRRSVSGGAVMMASGAISWFSRVQKVTAAASSESEYVALAEMVNELRFLRQVKDFMIPQSTSP 152
            G +   +VDADY +    RRSVSGG VM   G ++WFSR+QK  + +++ESEYVA+A++  E+ FLRQV  FM+P ++ P
Sbjct:  177 GMSTRVFVDADYASKAADRRSVSGGLVMCGGGCVTWFSRMQKCFSLSTTESEYVAIADVSKEVLFLRQVCRFMLPDASMP 256          
BLAST of mRNA_H-elongata_contig110065.823.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 3.000e-13
Identity = 38/80 (47.50%), Postives = 55/80 (68.75%), Query Frame = 0
Query:   73 GTNLSAWVDADYGTCPDTRRSVSGGAVMMASGAISWFSRVQKVTAAASSESEYVALAEMVNELRFLRQVKDFMIPQSTSP 152
            G ++  +VDADY +    RRSVSGG VM   G ++WFSR QK    +++E+EYVA+A+++ E+ FLRQV  FM+P +  P
Sbjct:  281 GMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMP 360          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110065.823.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRV1_9PHAE1.410e-1448.91Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JTT9_9PHAE2.160e-1447.50Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIL0_9PHAE2.660e-1435.93Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K592_9PHAE3.650e-1447.57Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L4G9_9PHAE9.280e-1447.50Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JWA6_9PHAE1.290e-1352.50Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KP70_9PHAE1.610e-1347.50Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3H6_9PHAE1.660e-1346.99Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K7P1_9PHAE2.350e-1348.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEF2_9PHAE3.000e-1347.50Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439:SF275coord: 70..141
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 70..141

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110065contigH-elongata_contig110065:1355..2108 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110065.823.1mRNA_H-elongata_contig110065.823.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig110065 575..2109 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig110065.823.1 ID=prot_H-elongata_contig110065.823.1|Name=mRNA_H-elongata_contig110065.823.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=218bp
MAERFGVTKTSIIPSVSGGRALPKSDSPQTDAEVEEMRQIPYREIVGTLI
KRYNIYGALGTLGSPTEGNRGGGTNLSAWVDADYGTCPDTRRSVSGGAVM
MASGAISWFSRVQKVTAAASSESEYVALAEMVNELRFLRQVKDFMIPQST
SPSRYTRTTKTQSRWRNTASAVDERGTWTSSITLSATRSRGGWSTWNTFG
RGTARRHSHEVLRRQDI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039537Retrotran_Ty1/copia-like