prot_H-elongata_contig109989.811.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig109989.811.1
Unique Nameprot_H-elongata_contig109989.811.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length119
Homology
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BLAST of mRNA_H-elongata_contig109989.811.1 vs. uniprot
Match: M2Y9Y5_GALSU (PsbB mRNA maturation factor Mbb1 (Plastid) n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y9Y5_GALSU)

HSP 1 Score: 51.2 bits (121), Expect = 5.470e-5
Identity = 21/42 (50.00%), Postives = 29/42 (69.05%), Query Frame = 0 
Query:    2 ARRLFANGLKADPGNPFVCHAWGLMEHRDGDIDRARDIFKVC 43
            AR+LF  GL  +  N ++  AWGLME R G+I+RAR++F  C
Sbjct:  178 ARQLFQKGLSIEMDNGYIYQAWGLMEQRLGNIERARELFHEC 219
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig109989.811.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
M2Y9Y5_GALSU5.470e-550.00PsbB mRNA maturation factor Mbb1 (Plastid) n=1 Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 52..72
NoneNo IPR availablePANTHERPTHR44917FAMILY NOT NAMEDcoord: 1..77
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..119
e-value: 1.0E-10
score: 43.3
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 2..83

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig109989contigH-elongata_contig109989:724..1672 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig109989.811.1mRNA_H-elongata_contig109989.811.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig109989 703..1672 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig109989.811.1 ID=prot_H-elongata_contig109989.811.1|Name=mRNA_H-elongata_contig109989.811.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
MARRLFANGLKADPGNPFVCHAWGLMEHRDGDIDRARDIFKVCRSSRPKA
AIASALGELEATRGDLEGARREFQEGLARLEEARGGRAAPRRKPGDWEES
EDPAEILVAWARLEEQVVN
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf