prot_H-elongata_contig109892.800.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig109892.800.1
Unique Nameprot_H-elongata_contig109892.800.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length44
Homology
BLAST of mRNA_H-elongata_contig109892.800.1 vs. uniprot
Match: D7FK17_ECTSI (Novel Sm-like protein with long N-and C-terminal domains n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK17_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 7.390e-15
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 0
Query:    1 MSGDLIGSRISLISRKDIRWEGILVQVDRENASVTLQS 38
            MSGDL+GSRISLISRKDIRWEGILVQVDRENASVTLQ+
Sbjct:    1 MSGDLVGSRISLISRKDIRWEGILVQVDRENASVTLQN 38          
BLAST of mRNA_H-elongata_contig109892.800.1 vs. uniprot
Match: A0A6H5KDD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDD7_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.130e-14
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 0
Query:    1 MSGDLIGSRISLISRKDIRWEGILVQVDRENASVTLQS 38
            MSGDL+GSRISLISRKDIRWEGILVQVDRENASVTLQ+
Sbjct:    1 MSGDLVGSRISLISRKDIRWEGILVQVDRENASVTLQN 38          
BLAST of mRNA_H-elongata_contig109892.800.1 vs. uniprot
Match: A0A836C876_9STRA (Scd6-like Sm domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C876_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 3.310e-7
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 0
Query:    2 SGDLIGSRISLISRKDIRWEGILVQVDRENASVTLQ 37
            S  LIGSRISLIS+KDIR+EGIL  +D EN+SVTLQ
Sbjct:    3 SQQLIGSRISLISKKDIRYEGILYGIDVENSSVTLQ 38          
BLAST of mRNA_H-elongata_contig109892.800.1 vs. uniprot
Match: W7TTD5_9STRA (Ribonucleoprotein LSM n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TTD5_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 1.820e-6
Identity = 24/36 (66.67%), Postives = 30/36 (83.33%), Query Frame = 0
Query:    3 GDLIGSRISLISRKDIRWEGILVQVDRENASVTLQS 38
            G LIGS ISL+S KDIR+EG+L  +D+E +SVTLQS
Sbjct:    5 GKLIGSVISLVSNKDIRYEGVLYAIDQEKSSVTLQS 40          
BLAST of mRNA_H-elongata_contig109892.800.1 vs. uniprot
Match: A0A4D9D9H3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D9H3_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 2.230e-6
Identity = 24/36 (66.67%), Postives = 30/36 (83.33%), Query Frame = 0
Query:    3 GDLIGSRISLISRKDIRWEGILVQVDRENASVTLQS 38
            G LIGS ISL+S KDIR+EG+L  +D+E +SVTLQS
Sbjct:    5 GKLIGSVISLVSNKDIRYEGVLYAIDQEKSSVTLQS 40          
BLAST of mRNA_H-elongata_contig109892.800.1 vs. uniprot
Match: A0A0V0XHR1_TRIPS (Protein LSM14-like protein A n=1 Tax=Trichinella pseudospiralis TaxID=6337 RepID=A0A0V0XHR1_TRIPS)

HSP 1 Score: 46.2 bits (108), Expect = 1.190e-5
Identity = 21/39 (53.85%), Postives = 29/39 (74.36%), Query Frame = 0
Query:    1 MSGDLIGSRISLISRKDIRWEGILVQVDRENASVTLQSG 39
            M+  L+GS+ISLIS+ +IR+EGIL  VD E +S+ L  G
Sbjct:    1 MNAPLLGSKISLISKSEIRYEGILYTVDPEQSSIALAKG 39          
BLAST of mRNA_H-elongata_contig109892.800.1 vs. uniprot
Match: A0A6H5L3S6_9PHAE (LSM14 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3S6_9PHAE)

HSP 1 Score: 45.4 bits (106), Expect = 3.560e-5
Identity = 20/35 (57.14%), Postives = 29/35 (82.86%), Query Frame = 0
Query:    5 LIGSRISLISRKDIRWEGILVQVDRENASVTLQSG 39
            L+GSRISLIS+K+IR+EG L  ++  +AS+ LQ+G
Sbjct:   10 LVGSRISLISKKNIRYEGTLYNINTSDASLALQNG 44          
BLAST of mRNA_H-elongata_contig109892.800.1 vs. uniprot
Match: L5JQY9_PTEAL (Protein LSM14 like protein A n=1 Tax=Pteropus alecto TaxID=9402 RepID=L5JQY9_PTEAL)

HSP 1 Score: 47.0 bits (110), Expect = 4.120e-5
Identity = 21/36 (58.33%), Postives = 28/36 (77.78%), Query Frame = 0
Query:    6 IGSRISLISRKDIRWEGILVQVDRENASVTLQSGEP 41
            IGS+ISLIS+ +IR+EGIL  +D EN++V L  G P
Sbjct:    8 IGSKISLISKAEIRYEGILYTIDTENSTVALAKGTP 43          
BLAST of mRNA_H-elongata_contig109892.800.1 vs. uniprot
Match: A0A8J6DXJ6_GALPY (Protein LSM14 A n=1 Tax=Galemys pyrenaicus TaxID=202257 RepID=A0A8J6DXJ6_GALPY)

HSP 1 Score: 47.0 bits (110), Expect = 4.930e-5
Identity = 21/36 (58.33%), Postives = 28/36 (77.78%), Query Frame = 0
Query:    6 IGSRISLISRKDIRWEGILVQVDRENASVTLQSGEP 41
            IGS+ISLIS+ +IR+EGIL  +D EN++V L  G P
Sbjct:    8 IGSKISLISKAEIRYEGILYTIDTENSTVALAKGTP 43          
BLAST of mRNA_H-elongata_contig109892.800.1 vs. uniprot
Match: A0A1Z5JPN3_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JPN3_FISSO)

HSP 1 Score: 47.4 bits (111), Expect = 6.930e-5
Identity = 19/38 (50.00%), Postives = 31/38 (81.58%), Query Frame = 0
Query:    1 MSGDLIGSRISLISRKDIRWEGILVQVDRENASVTLQS 38
            M+  L+G RISL+S+K+IR+EG+L  ++ +NA+V LQ+
Sbjct:    1 MTNPLLGKRISLVSKKNIRYEGVLYSINEQNATVALQN 38          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig109892.800.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FK17_ECTSI7.390e-1594.74Novel Sm-like protein with long N-and C-terminal d... [more]
A0A6H5KDD7_9PHAE1.130e-1494.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C876_9STRA3.310e-775.00Scd6-like Sm domain-containing protein n=1 Tax=Tri... [more]
W7TTD5_9STRA1.820e-666.67Ribonucleoprotein LSM n=2 Tax=Nannochloropsis gadi... [more]
A0A4D9D9H3_9STRA2.230e-666.67Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A0V0XHR1_TRIPS1.190e-553.85Protein LSM14-like protein A n=1 Tax=Trichinella p... [more]
A0A6H5L3S6_9PHAE3.560e-557.14LSM14 domain-containing protein n=1 Tax=Ectocarpus... [more]
L5JQY9_PTEAL4.120e-558.33Protein LSM14 like protein A n=1 Tax=Pteropus alec... [more]
A0A8J6DXJ6_GALPY4.930e-558.33Protein LSM14 A n=1 Tax=Galemys pyrenaicus TaxID=2... [more]
A0A1Z5JPN3_FISSO6.930e-550.00Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025609Lsm14-like, N-terminalPFAMPF12701LSM14coord: 5..38
e-value: 1.6E-10
score: 41.0
NoneNo IPR availableGENE3D2.30.30.100coord: 1..40
e-value: 1.0E-10
score: 43.2
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 5..38

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig109892contigH-elongata_contig109892:1784..1915 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig109892.800.1mRNA_H-elongata_contig109892.800.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig109892 1784..1915 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig109892.800.1 ID=prot_H-elongata_contig109892.800.1|Name=mRNA_H-elongata_contig109892.800.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=44bp
MSGDLIGSRISLISRKDIRWEGILVQVDRENASVTLQSGEPSS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025609Lsm14-like_N
IPR010920LSM_dom_sf