prot_H-elongata_contig109878.798.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig109878.798.1
Unique Nameprot_H-elongata_contig109878.798.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length146
Homology
BLAST of mRNA_H-elongata_contig109878.798.1 vs. uniprot
Match: D8LTT7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTT7_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 2.450e-43
Identity = 79/144 (54.86%), Postives = 97/144 (67.36%), Query Frame = 0
Query:    1 MPTSGVLAENQEVTIRFWGSPPPPQDPTIPSAVYNGEISAAFHVLSRTAEAGSTTVSSAKYYVATFYYCEAGAFWNGEKCVLCVELASAMVDGVDSLECDMPGVTLVTLPLAAGYWRGDVNSTNVEPCLLDDACKGGRGIVSSN 144
            +P SG L   QEVTI+  G+PPPP DP+ P AVYNGE++A F V++RTA A S   S A     TFYYC AG++W+GE CV C E+   M DG DSLEC +PGVTL TLPLA GYWRGD+  T +  C    AC GG G+ +S+
Sbjct:  902 VPWSGYLVRGQEVTIQLVGTPPPPPDPSAPFAVYNGEVAAKFRVVTRTAAADSVATSVATEVERTFYYCAAGSYWHGEACVACAEV---MADGEDSLECSVPGVTLDTLPLAEGYWRGDITQTYIRECWNPSACAGGTGVNASS 1042          
BLAST of mRNA_H-elongata_contig109878.798.1 vs. uniprot
Match: A0A6H5JUJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUJ2_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 6.170e-43
Identity = 75/146 (51.37%), Postives = 97/146 (66.44%), Query Frame = 0
Query:    1 MPTSGVLAENQEVTIRFWGSPPPPQDPTIPSAVYNGEISAAFHVLSRTAEAGSTTVSSAKYYVATFYYCEAGAFWNGEKCVLCVELASAMVDGVDSLECDMPGVTLVTLPLAAGYWRGDVNSTNVEPCLLDDACKGGRGIVSSNST 146
            +P SG L   QEVTI+  G+PPPP DP+   AVYNGE++A F V++RTA A S   S A     TFYYC AG++W+GE CV C +  + M DG  SL+C  PG+TL TLPLA GYWRGD+  T +  C    AC GG G+++S+S+
Sbjct:  903 VPWSGYLVRGQEVTIQLVGTPPPPPDPSAVFAVYNGEVAAEFRVVTRTAAADSAAASVAAGVERTFYYCAAGSYWDGETCVTCAQAMATMADGEGSLDCSAPGITLDTLPLAEGYWRGDITQTYIRKCWNPSACAGGTGVITSSSS 1048          
BLAST of mRNA_H-elongata_contig109878.798.1 vs. uniprot
Match: A0A835YMX7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMX7_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 5.830e-6
Identity = 26/71 (36.62%), Postives = 39/71 (54.93%), Query Frame = 0
Query:   69 CEAGAFWNGEKCVLCVELASAMVDGVDSLECDMPGVTLVTLPLAAGYWRGDVN--STNVEPCLLDDACKGG 137
            C+ G +   ++CV C           + L+C +PGVT+ TLPL  G+WRG++     ++ PC   DAC GG
Sbjct:  807 CQKGNYMGADQCVTC---------DTEVLDCQVPGVTIKTLPLRKGWWRGNLTLAQADILPCWNADACIGG 868          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig109878.798.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LTT7_ECTSI2.450e-4354.86Polymorphic Outer membrane protein G/I family n=1 ... [more]
A0A6H5JUJ2_9PHAE6.170e-4351.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YMX7_9STRA5.830e-636.62Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig109878contigH-elongata_contig109878:127..876 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig109878.798.1mRNA_H-elongata_contig109878.798.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig109878 127..906 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig109878.798.1 ID=prot_H-elongata_contig109878.798.1|Name=mRNA_H-elongata_contig109878.798.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=146bp
MPTSGVLAENQEVTIRFWGSPPPPQDPTIPSAVYNGEISAAFHVLSRTAE
AGSTTVSSAKYYVATFYYCEAGAFWNGEKCVLCVELASAMVDGVDSLECD
MPGVTLVTLPLAAGYWRGDVNSTNVEPCLLDDACKGGRGIVSSNST
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