prot_H-elongata_contig109399.763.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig109399.763.1
Unique Name	prot_H-elongata_contig109399.763.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	109

Homology

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BLAST of mRNA_H-elongata_contig109399.763.1 vs. uniprot
Match: D7FWD1_ECTSI (Clathrin heavy chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWD1_ECTSI)

HSP 1 Score: 209 bits (531), Expect = 2.020e-60
Identity = 99/109 (90.83%), Postives = 105/109 (96.33%), Query Frame = 0

Query:    1 VLRACERALLWDEAVYLFKEDGQFDSAVKTMIEHCVCFNHELFLDCVKKVRNQEVNYRAIAFYLEQHPLKLVRLLTVLTPNLDHSRVVHQLRRAENLPLAVDYLKSVQK 109
            VLRACERALLWDEAVYL+KED Q+DSAVKTMI+HCVCF HELFLDCV KVRNQEVNY+AI FYLEQHPLKLVRLLTVLTPNLDHSRVVHQLR+AENLPLA+DYLKSVQK
Sbjct: 1334 VLRACERALLWDEAVYLYKEDAQYDSAVKTMIDHCVCFKHELFLDCVTKVRNQEVNYKAITFYLEQHPLKLVRLLTVLTPNLDHSRVVHQLRKAENLPLAIDYLKSVQK 1442

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BLAST of mRNA_H-elongata_contig109399.763.1 vs. uniprot
Match: A0A835YZH1_9STRA (Clathrin heavy chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZH1_9STRA)

HSP 1 Score: 183 bits (464), Expect = 2.140e-51
Identity = 85/109 (77.98%), Postives = 99/109 (90.83%), Query Frame = 0

Query:    1 VLRACERALLWDEAVYLFKEDGQFDSAVKTMIEHCVCFNHELFLDCVKKVRNQEVNYRAIAFYLEQHPLKLVRLLTVLTPNLDHSRVVHQLRRAENLPLAVDYLKSVQK 109
            VLRACERALLWDEAVYL+KEDGQ DSAV+ MIEHC  + H+LF++CV+KVRNQE+ YRAI FY+EQHPL LVRLL VLTP+LDH+RVVHQLR+AENLPLA +YL+SVQK
Sbjct: 1376 VLRACERALLWDEAVYLYKEDGQHDSAVRAMIEHCTAWKHDLFIECVQKVRNQEIYYRAIGFYMEQHPLDLVRLLKVLTPHLDHARVVHQLRKAENLPLATEYLQSVQK 1484

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BLAST of mRNA_H-elongata_contig109399.763.1 vs. uniprot
Match: A0A4D9DAY4_9STRA (Clathrin heavy chain n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DAY4_9STRA)

HSP 1 Score: 179 bits (453), Expect = 6.510e-50
Identity = 86/109 (78.90%), Postives = 97/109 (88.99%), Query Frame = 0

Query:    1 VLRACERALLWDEAVYLFKEDGQFDSAVKTMIEHCVCFNHELFLDCVKKVRNQEVNYRAIAFYLEQHPLKLVRLLTVLTPNLDHSRVVHQLRRAENLPLAVDYLKSVQK 109
            +LRACE+ALLWDE VYL+KEDGQ D+AVKTMIEH + F HELFLDC++K RNQEV YRAIAFYLEQ P+ L RLLT+LTPNLDH+RVVHQLRRAENLPL + YLKSVQK
Sbjct: 1369 MLRACEKALLWDETVYLYKEDGQPDNAVKTMIEHPIAFYHELFLDCIQKARNQEVYYRAIAFYLEQQPMLLERLLTLLTPNLDHARVVHQLRRAENLPLVLPYLKSVQK 1477

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BLAST of mRNA_H-elongata_contig109399.763.1 vs. uniprot
Match: A0A024U3J7_9STRA (Clathrin heavy chain n=10 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024U3J7_9STRA)

HSP 1 Score: 177 bits (450), Expect = 1.650e-49
Identity = 80/109 (73.39%), Postives = 98/109 (89.91%), Query Frame = 0

Query:    1 VLRACERALLWDEAVYLFKEDGQFDSAVKTMIEHCVCFNHELFLDCVKKVRNQEVNYRAIAFYLEQHPLKLVRLLTVLTPNLDHSRVVHQLRRAENLPLAVDYLKSVQK 109
            +LRACE+ L WD AVYL+KEDGQFD+AV+TM++H V F H+LFLDC++KVRNQE++Y+AI FYLEQHPL+L RLL VLTPNLDH+RVVHQLR+++NLPL VDYLK VQK
Sbjct: 1360 ILRACEKGLHWDHAVYLYKEDGQFDNAVRTMVDHPVAFAHDLFLDCIQKVRNQEIHYKAINFYLEQHPLELTRLLQVLTPNLDHARVVHQLRKSDNLPLVVDYLKDVQK 1468

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BLAST of mRNA_H-elongata_contig109399.763.1 vs. uniprot
Match: A0A225V906_9STRA (Clathrin heavy chain (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V906_9STRA)

HSP 1 Score: 177 bits (448), Expect = 3.030e-49
Identity = 79/109 (72.48%), Postives = 99/109 (90.83%), Query Frame = 0

Query:    1 VLRACERALLWDEAVYLFKEDGQFDSAVKTMIEHCVCFNHELFLDCVKKVRNQEVNYRAIAFYLEQHPLKLVRLLTVLTPNLDHSRVVHQLRRAENLPLAVDYLKSVQK 109
            +LRACE+ L WD AVYL+KEDGQFD+AV+TM++H V F+H+LFLDC++KVRNQE++Y+AI FYLEQHPL+L RLL VLTPNLDH+RVVHQLR+++NLPL V+YLK VQK
Sbjct:  956 ILRACEKGLHWDHAVYLYKEDGQFDNAVRTMVDHPVAFSHDLFLDCIQKVRNQEIHYKAINFYLEQHPLELTRLLQVLTPNLDHARVVHQLRKSKNLPLVVEYLKDVQK 1064

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BLAST of mRNA_H-elongata_contig109399.763.1 vs. uniprot
Match: A0A2P4XMC0_9STRA (Clathrin heavy chain n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XMC0_9STRA)

HSP 1 Score: 176 bits (447), Expect = 3.700e-49
Identity = 78/109 (71.56%), Postives = 99/109 (90.83%), Query Frame = 0

Query:    1 VLRACERALLWDEAVYLFKEDGQFDSAVKTMIEHCVCFNHELFLDCVKKVRNQEVNYRAIAFYLEQHPLKLVRLLTVLTPNLDHSRVVHQLRRAENLPLAVDYLKSVQK 109
            +LRACE+ L WD AVYL+KEDGQFD+AV+TM++H + F+H+LFLDC++KVRNQE++Y+AI FYLEQHPL+L RLL VLTPNLDH+RVVHQLR+++NLPL V+YLK VQK
Sbjct:  620 ILRACEKGLHWDHAVYLYKEDGQFDNAVRTMVDHPIAFSHDLFLDCIQKVRNQEIHYKAINFYLEQHPLELTRLLQVLTPNLDHARVVHQLRKSKNLPLVVEYLKDVQK 728

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BLAST of mRNA_H-elongata_contig109399.763.1 vs. uniprot
Match: A0A5D6XWJ0_9STRA (Clathrin-link domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XWJ0_9STRA)

HSP 1 Score: 176 bits (447), Expect = 4.240e-49
Identity = 80/109 (73.39%), Postives = 97/109 (88.99%), Query Frame = 0

Query:    1 VLRACERALLWDEAVYLFKEDGQFDSAVKTMIEHCVCFNHELFLDCVKKVRNQEVNYRAIAFYLEQHPLKLVRLLTVLTPNLDHSRVVHQLRRAENLPLAVDYLKSVQK 109
            VLRACE+ L WD AVYL+KEDGQFD+AV+TM++H V F+H+LFLDC++KVRNQE++Y+AI FYLEQHPL+L RLL VLTPNLDH+RVVHQLR+  NLPL V+YLK VQK
Sbjct: 1363 VLRACEKGLHWDHAVYLYKEDGQFDNAVRTMVDHPVAFSHDLFLDCIQKVRNQEIHYKAIHFYLEQHPLELTRLLQVLTPNLDHARVVHQLRKTSNLPLVVEYLKDVQK 1471

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BLAST of mRNA_H-elongata_contig109399.763.1 vs. uniprot
Match: K3WLC2_GLOUD (Clathrin heavy chain n=31 Tax=Oomycota TaxID=4762 RepID=K3WLC2_GLOUD)

HSP 1 Score: 175 bits (444), Expect = 1.060e-48
Identity = 80/109 (73.39%), Postives = 96/109 (88.07%), Query Frame = 0

Query:    1 VLRACERALLWDEAVYLFKEDGQFDSAVKTMIEHCVCFNHELFLDCVKKVRNQEVNYRAIAFYLEQHPLKLVRLLTVLTPNLDHSRVVHQLRRAENLPLAVDYLKSVQK 109
            VLRACE+ L WD AVYL+KEDGQFD+AV+TM++H V F H+LFLDC++KVRNQE++Y+AI FYLEQHPL+L RLL VLTPNLDH+RVVHQLR+  NLPL V+YLK VQK
Sbjct: 1363 VLRACEKGLHWDHAVYLYKEDGQFDNAVRTMVDHPVAFAHDLFLDCIQKVRNQEIHYKAINFYLEQHPLELTRLLQVLTPNLDHARVVHQLRKTHNLPLVVEYLKDVQK 1471

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BLAST of mRNA_H-elongata_contig109399.763.1 vs. uniprot
Match: A0A2D4BEN2_PYTIN (Clathrin heavy chain n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BEN2_PYTIN)

HSP 1 Score: 175 bits (443), Expect = 1.460e-48
Identity = 80/109 (73.39%), Postives = 96/109 (88.07%), Query Frame = 0

Query:    1 VLRACERALLWDEAVYLFKEDGQFDSAVKTMIEHCVCFNHELFLDCVKKVRNQEVNYRAIAFYLEQHPLKLVRLLTVLTPNLDHSRVVHQLRRAENLPLAVDYLKSVQK 109
            VLRACE+ L WD AVY +KEDGQFD+AV+TM++H V F H+LFLDC++KVRNQE++Y+AI FYLEQHPL+L RLL VLTPNLDH+RVVHQLR+A NLPL V+YLK VQK
Sbjct: 1766 VLRACEKGLHWDHAVYXYKEDGQFDNAVRTMVDHPVAFAHDLFLDCIQKVRNQEIHYKAINFYLEQHPLELTRLLQVLTPNLDHARVVHQLRKANNLPLVVEYLKDVQK 1874

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BLAST of mRNA_H-elongata_contig109399.763.1 vs. uniprot
Match: A0A3R6ZXA9_9STRA (Clathrin-link domain-containing protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6ZXA9_9STRA)

HSP 1 Score: 175 bits (443), Expect = 1.460e-48
Identity = 78/109 (71.56%), Postives = 98/109 (89.91%), Query Frame = 0

Query:    1 VLRACERALLWDEAVYLFKEDGQFDSAVKTMIEHCVCFNHELFLDCVKKVRNQEVNYRAIAFYLEQHPLKLVRLLTVLTPNLDHSRVVHQLRRAENLPLAVDYLKSVQK 109
            +LRACE+ L WD AVYL+KEDGQFD+AV+TM++H V F H+LFLDC+++VRNQE++Y+AI FYLEQHPL+L RLL VLTPNLDH+RVVHQLR+++NLPL V+YLK VQK
Sbjct: 1896 ILRACEKGLHWDHAVYLYKEDGQFDNAVRTMVDHPVAFAHDLFLDCIQRVRNQEIHYKAINFYLEQHPLELTRLLQVLTPNLDHARVVHQLRKSDNLPLVVEYLKDVQK 2004

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig109399.763.1 vs. uniprot

BLAST of mRNA_H-elongata_contig109399.763.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FWD1_ECTSI	2.020e-60	90.83	Clathrin heavy chain n=2 Tax=Ectocarpus TaxID=2879...	[more]
A0A835YZH1_9STRA	2.140e-51	77.98	Clathrin heavy chain n=1 Tax=Tribonema minus TaxID...	[more]
A0A4D9DAY4_9STRA	6.510e-50	78.90	Clathrin heavy chain n=2 Tax=Monodopsidaceae TaxID...	[more]
A0A024U3J7_9STRA	1.650e-49	73.39	Clathrin heavy chain n=10 Tax=Saprolegniaceae TaxI...	[more]
A0A225V906_9STRA	3.030e-49	72.48	Clathrin heavy chain (Fragment) n=1 Tax=Phytophtho...	[more]
A0A2P4XMC0_9STRA	3.700e-49	71.56	Clathrin heavy chain n=1 Tax=Phytophthora palmivor...	[more]
A0A5D6XWJ0_9STRA	4.240e-49	73.39	Clathrin-link domain-containing protein n=1 Tax=Py...	[more]
K3WLC2_GLOUD	1.060e-48	73.39	Clathrin heavy chain n=31 Tax=Oomycota TaxID=4762 ...	[more]
A0A2D4BEN2_PYTIN	1.460e-48	73.39	Clathrin heavy chain n=2 Tax=Pythium TaxID=4797 Re...	[more]
A0A3R6ZXA9_9STRA	1.460e-48	71.56	Clathrin-link domain-containing protein n=8 Tax=Ap...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10		coord: 1..109 e-value: 4.4E-34 score: 119.8
IPR000547	Clathrin, heavy chain/VPS, 7-fold repeat	PFAM	PF00637	Clathrin	coord: 1..70 e-value: 1.0E-9 score: 38.4
IPR000547	Clathrin, heavy chain/VPS, 7-fold repeat	PROSITE	PS50236	CHCR	coord: 1..72 score: 17.074
IPR000547	Clathrin, heavy chain/VPS, 7-fold repeat	PROSITE	PS50236	CHCR	coord: 75..109 score: 10.194
None	No IPR available	PANTHER	PTHR10292	CLATHRIN HEAVY CHAIN RELATED	coord: 1..109
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 2..108

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig109399	contig	H-elongata_contig109399:445..1372 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig109399.763.1	mRNA_H-elongata_contig109399.763.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig109399 445..1372 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig109399.763.1 ID=prot_H-elongata_contig109399.763.1|Name=mRNA_H-elongata_contig109399.763.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp
VLRACERALLWDEAVYLFKEDGQFDSAVKTMIEHCVCFNHELFLDCVKKV
RNQEVNYRAIAFYLEQHPLKLVRLLTVLTPNLDHSRVVHQLRRAENLPLA
VDYLKSVQK

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR000547	Clathrin_H-chain/VPS_repeat
IPR016024	ARM-type_fold