prot_H-elongata_contig10914.740.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig10914.740.1
Unique Nameprot_H-elongata_contig10914.740.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length905
Homology
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BLAST of mRNA_H-elongata_contig10914.740.1 vs. uniprot
Match: A0A6H5JST5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JST5_9PHAE)

HSP 1 Score: 219 bits (557), Expect = 4.970e-55
Identity = 108/169 (63.91%), Postives = 129/169 (76.33%), Query Frame = 0 
Query:  159 AVLPPPGTIQPLLLPMGRPQGARLMIQGTHPAVPERRIHALASTFGTVGKIEVLEGFVFVHMKYLEEAERAVAGLSTKLLPHVS-------AGLDIPLTAAVWSEQMYQALMSRDNMRAYADSMRKASTWYEKHKNAAFDGRTGVTMPCRFFAMGRGCVFGRNCVFFHD 320
            A+LPP  +++PL   + R QGARLMI+GTHPAVPERRIHAL STFG VGKIEVLEGFVFVHMK LEEA RAV GL+ +++PHVS           +PL AA+W E+ YQALMSR+NMR YADSMR+ASTWYEK   + F+   G  MPCRFF++GRGC+FG NC F H+
Sbjct:  825 ALLPPHFSLRPLPPMLVRAQGARLMIKGTHPAVPERRIHALVSTFGVVGKIEVLEGFVFVHMKSLEEATRAVTGLNGEVVPHVSPQATDRAGAAPLPLAAAIWREEQYQALMSRENMRIYADSMRRASTWYEKQTKSGFNDTLGKAMPCRFFSLGRGCIFGNNCGFSHE 993
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10914.740.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JST5_9PHAE4.970e-5563.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 175..257
e-value: 9.4E-6
score: 27.6
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 294..322
score: 11.789
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 180..252
score: 8.74
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILY90229CCCH zinc fingercoord: 299..325
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 174..237

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10914contigH-elongata_contig10914:3990..7020 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10914.740.1mRNA_H-elongata_contig10914.740.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig10914 3393..9036 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig10914.740.1 ID=prot_H-elongata_contig10914.740.1|Name=mRNA_H-elongata_contig10914.740.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=905bp
MKIGRDMDTVILLPHQHGTKAPHAAHEDLRGKTNGGSLFLGDCTGNEQMR
VERAEARVERGVRPSKRRLVDGIIESAYRGTQRGIILENDQRGADITRSH
SRANDIRPTKRYSAATQAEEVEGYTAGGQVFRGGWAREMVVPTSKEAVAG
MPVDVPPLAVLPPPGTIQPLLLPMGRPQGARLMIQGTHPAVPERRIHALA
STFGTVGKIEVLEGFVFVHMKYLEEAERAVAGLSTKLLPHVSAGLDIPLT
AAVWSEQMYQALMSRDNMRAYADSMRKASTWYEKHKNAAFDGRTGVTMPC
RFFAMGRGCVFGRNCVFFHDTHHSDMMGNFLSRGTVRNGAPLHLPAVPHS
GRPLMGPEHLNVRQNISTKENREELFRPMVQRDEQYVRSSTGPRSLRIPE
NSFSGTDAAAKIGLRDQMVTEHRPIDREFPYRSYGDRMGGRVERLGSRTL
IDPLSGRKSVDYPVKGVINRREQGYKLVDELQDSVMPGGRRIDDGNAKAR
ENTKRPRERFHSPSPRRDPYGSYDRSSEMDETAYDRIPRHRSDFDMIAET
NYDVRKSSRRDRKFADSKSNSRGRHRIKGRDYHRQSYDRRDRESYDRRDR
NAARRDRNVYLGEYTEHRDRDDPRRDYYPSRRDGDAGRRVRGAARHSSPT
SRSPPKKYRDGAVSRRDLKKGRYDFERDERPVVRSREKRGKDGDKSRLSK
DRADKHIGSRNGDHGRHYNRPGSTSNRDKRSGSHDNDSGNDDRGGVRGMI
RSTSKRGDERGDTKKDRGDEVAFPKQRKDDYIDKKPPRQSHRDHSAAVDD
GMREEQEERGKGFPDWDDELMGDGSVKAGSGGPLDTTFTVTARIDTQSPE
RDTVVPAGPTFSVTMPSKINRALGSRSLQGVEVPGVRHGRGGRGRGRGRG
RGGT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000571Znf_CCCH
IPR000504RRM_dom
IPR036855Znf_CCCH_sf
IPR035979RBD_domain_sf