prot_H-elongata_contig10875.710.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig10875.710.1
Unique Nameprot_H-elongata_contig10875.710.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length87
Homology
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BLAST of mRNA_H-elongata_contig10875.710.1 vs. uniprot
Match: D7FPF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF6_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 4.210e-7
Identity = 27/52 (51.92%), Postives = 37/52 (71.15%), Query Frame = 0 
Query:   31 GSIWDY-NVNNSGPTNVTDCTFDGNQATDGGAIYSTASYDMVVNSSFLENIA 81
            GS+W+  + ++SGP N T C F+ N A DGGAIYS A YD++ +S F +NIA
Sbjct:  393 GSVWNVESPDDSGPANTTTCVFERNSAEDGGAIYSAAGYDIISDSWFEDNIA 444
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BLAST of mRNA_H-elongata_contig10875.710.1 vs. uniprot
Match: UPI00158A6BAB (hypothetical protein n=1 Tax=Victivallis sp. Marseille-Q1083 TaxID=2717288 RepID=UPI00158A6BAB)

HSP 1 Score: 50.1 bits (118), Expect = 4.790e-5
Identity = 33/85 (38.82%), Postives = 46/85 (54.12%), Query Frame = 0 
Query:    1 YSLRAVVSLKGATFTGNSG---VWGGGVAHFSSGSIWDYNVNNSGPTNVTDCTFDGNQATDGGAIYSTASYDMVVNSSFLENIAG 82
            Y+    V + G  F GNSG     GG +   S G++    + N+GP+ V+DCTF GN    GG IY   S  ++ N+ FL N+AG
Sbjct:  616 YASGKPVIITGTVFRGNSGPTSTMGGPMG--SGGALV---LTNAGPSEVSDCTFQGNMGYYGGGIYVMGSQVVMNNNRFLGNVAG 695
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10875.710.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FPF6_ECTSI4.210e-751.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI00158A6BAB4.790e-538.82hypothetical protein n=1 Tax=Victivallis sp. Marse... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003368Polymorphic outer membrane protein repeatTIGRFAMTIGR01376TIGR01376coord: 45..65
e-value: 2.0E-6
score: 25.4
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 8..81

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10875contigH-elongata_contig10875:3750..4398 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10875.710.1mRNA_H-elongata_contig10875.710.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig10875 3750..4398 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig10875.710.1 ID=prot_H-elongata_contig10875.710.1|Name=mRNA_H-elongata_contig10875.710.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
YSLRAVVSLKGATFTGNSGVWGGGVAHFSSGSIWDYNVNNSGPTNVTDCT
FDGNQATDGGAIYSTASYDMVVNSSFLENIAGRSWE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003368POMP_repeat
IPR011050Pectin_lyase_fold/virulence