prot_H-elongata_contig108325.679.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig108325.679.1
Unique Nameprot_H-elongata_contig108325.679.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length106
Homology
BLAST of mRNA_H-elongata_contig108325.679.1 vs. uniprot
Match: D8LK47_ECTSI (PolyA_pol domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK47_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 1.080e-13
Identity = 43/91 (47.25%), Postives = 61/91 (67.03%), Query Frame = 0
Query:   15 SKRQRISNIQ-HMAASPIK-HVHPLGDRQPRGVIRGSNRFSSDLTMDISNSLTPTEAQVLGLMMEAVKHAESQTVVRIAGGWVRDKLLGLQ 103
            +KRQR  +I   MAA+  + H+ PL    PR   RG +     L M+I + L P EA +L +++EAVK++++ TVVR+AGGWVRDKLLGL+
Sbjct:    4 AKRQRTDSIGGDMAANRSREHMGPLA-LTPRNGRRGESAVGGTLKMNIVSCLKPNEADILAMLLEAVKYSKTGTVVRVAGGWVRDKLLGLE 93          
BLAST of mRNA_H-elongata_contig108325.679.1 vs. uniprot
Match: A0A835Z0V0_9STRA (PNPLA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0V0_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 9.780e-8
Identity = 30/54 (55.56%), Postives = 37/54 (68.52%), Query Frame = 0
Query:   54 SDLTMDISNSLTPTEAQVLGLMMEAVKHAE----SQTVVRIAGGWVRDKLLGLQ 103
            S+L MD+ N LT  E QV  L++E+ K  E      TV+R+AGGWVRDKLLGLQ
Sbjct:    3 SNLHMDLRNRLTAKEQQVFKLLLESAKSQEHGSTGNTVIRVAGGWVRDKLLGLQ 56          
BLAST of mRNA_H-elongata_contig108325.679.1 vs. uniprot
Match: A0A0D2MXN4_9CHLO (PolyA_pol domain-containing protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MXN4_9CHLO)

HSP 1 Score: 53.5 bits (127), Expect = 5.350e-6
Identity = 25/50 (50.00%), Postives = 36/50 (72.00%), Query Frame = 0
Query:   56 LTMDISNSLTPTEAQVLGLMMEAVKHAESQTVVRIAGGWVRDKLLGLQVK 105
            +T+  + SLT  E ++  L++E+VKHA + T +R AGGWVRDKLLG + K
Sbjct:    2 VTVQEAISLTQEEQELFTLLLESVKHAGTDTTLRCAGGWVRDKLLGKESK 51          
BLAST of mRNA_H-elongata_contig108325.679.1 vs. uniprot
Match: A0A2V0NUI1_9CHLO (PolyA_pol domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NUI1_9CHLO)

HSP 1 Score: 52.8 bits (125), Expect = 9.990e-6
Identity = 24/43 (55.81%), Postives = 31/43 (72.09%), Query Frame = 0
Query:   63 SLTPTEAQVLGLMMEAVKHAESQTVVRIAGGWVRDKLLGLQVK 105
            SLT  E ++  L++EA  HA + T +R AGGWVRDKLLGL+ K
Sbjct:    9 SLTAEEQELFSLLLEAANHAGTGTTLRCAGGWVRDKLLGLESK 51          
BLAST of mRNA_H-elongata_contig108325.679.1 vs. uniprot
Match: A0A6G0WBQ3_9STRA (PolyA_pol domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WBQ3_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.340e-5
Identity = 23/47 (48.94%), Postives = 35/47 (74.47%), Query Frame = 0
Query:   57 TMDISNS--LTPTEAQVLGLMMEAVKHAESQTVVRIAGGWVRDKLLG 101
            +M++S +  LTP E ++  L+++  KH+ES   +R+AGGWVRDKLLG
Sbjct:    5 SMEVSTTIALTPDEEKLFALLLDVNKHSESNLTLRVAGGWVRDKLLG 51          
BLAST of mRNA_H-elongata_contig108325.679.1 vs. uniprot
Match: A0A8J8T502_HALGN (Uncharacterized protein n=1 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8T502_HALGN)

HSP 1 Score: 52.0 bits (123), Expect = 1.870e-5
Identity = 24/53 (45.28%), Postives = 34/53 (64.15%), Query Frame = 0
Query:   49 SNRFSSDLTMDISNSLTPTEAQVLGLMMEAVKHAESQTVVRIAGGWVRDKLLG 101
            S   SS   +DI+ +LT  E Q+   +ME V   E +T +R+AGGWVRDK++G
Sbjct:   67 SKMDSSQYRVDINITLTDKERQIFDTLMELVTEQELKTTLRVAGGWVRDKIMG 119          
BLAST of mRNA_H-elongata_contig108325.679.1 vs. uniprot
Match: A0A7S0TPB2_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TPB2_HEMAN)

HSP 1 Score: 51.6 bits (122), Expect = 2.350e-5
Identity = 24/56 (42.86%), Postives = 34/56 (60.71%), Query Frame = 0
Query:   47 RGSNRFSSDLTMDISNSLTPTEAQVLGLMMEAVKHAESQTVVRIAGGWVRDKLLGL 102
            R      S     +S SLTP E+ +  L+ME V+  +   V+R+AGGWVRDK++GL
Sbjct:   21 RAKTMSESAAVPGLSISLTPEESALFALLMEVVRQCKLGCVLRVAGGWVRDKIMGL 76          
BLAST of mRNA_H-elongata_contig108325.679.1 vs. uniprot
Match: A0A150GPI3_GONPE (PolyA_pol domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GPI3_GONPE)

HSP 1 Score: 51.2 bits (121), Expect = 2.490e-5
Identity = 24/49 (48.98%), Postives = 35/49 (71.43%), Query Frame = 0
Query:   53 SSDLTMDISNSLTPTEAQVLGLMMEAVKHAESQTVVRIAGGWVRDKLLG 101
            +++L +  + SLTP E ++   ++ A +HA S TV+R AGGWVRDKLLG
Sbjct:   20 AAELLVRETISLTPGERELFDTLLAASRHAGSSTVMRCAGGWVRDKLLG 68          
BLAST of mRNA_H-elongata_contig108325.679.1 vs. uniprot
Match: UPI001CB8E98C (tRNA nucleotidyltransferase cca2-like n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB8E98C)

HSP 1 Score: 51.6 bits (122), Expect = 2.520e-5
Identity = 24/54 (44.44%), Postives = 35/54 (64.81%), Query Frame = 0
Query:   48 GSNRFSSDLTMDISNSLTPTEAQVLGLMMEAVKHAESQTVVRIAGGWVRDKLLG 101
            G+   SS + +  + SLT  E Q+ G +++ V H   +T +R+AGGWVRDKLLG
Sbjct:   25 GTLSASSSVVVKENISLTDKERQIFGKLLQVVHHFNLETQLRVAGGWVRDKLLG 78          
BLAST of mRNA_H-elongata_contig108325.679.1 vs. uniprot
Match: A0A7J6FF93_CANSA (PolyA_pol domain-containing protein n=5 Tax=Cannabis sativa TaxID=3483 RepID=A0A7J6FF93_CANSA)

HSP 1 Score: 51.6 bits (122), Expect = 2.550e-5
Identity = 29/75 (38.67%), Postives = 42/75 (56.00%), Query Frame = 0
Query:   29 SPIKHVHPLGDRQPRGVIRGSNRFSSDLTMDISNS--LTPTEAQVLGLMMEAVKHAESQTVVRIAGGWVRDKLLG 101
            +PIK +  L  RQP   +  S   SS  T+ +     LT  E Q+   ++  ++H + Q  +R+AGGWVRDKLLG
Sbjct:   42 TPIKTLPSLFSRQP---MTASAAASSSPTVHVKEKIELTDVEKQIFDRLLGTLRHFDLQNQLRVAGGWVRDKLLG 113          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig108325.679.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LK47_ECTSI1.080e-1347.25PolyA_pol domain-containing protein n=2 Tax=Ectoca... [more]
A0A835Z0V0_9STRA9.780e-855.56PNPLA domain-containing protein n=1 Tax=Tribonema ... [more]
A0A0D2MXN4_9CHLO5.350e-650.00PolyA_pol domain-containing protein n=1 Tax=Monora... [more]
A0A2V0NUI1_9CHLO9.990e-655.81PolyA_pol domain-containing protein n=1 Tax=Raphid... [more]
A0A6G0WBQ3_9STRA1.340e-548.94PolyA_pol domain-containing protein n=1 Tax=Aphano... [more]
A0A8J8T502_HALGN1.870e-545.28Uncharacterized protein n=1 Tax=Halteria grandinel... [more]
A0A7S0TPB2_HEMAN2.350e-542.86Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
A0A150GPI3_GONPE2.490e-548.98PolyA_pol domain-containing protein n=1 Tax=Gonium... [more]
UPI001CB8E98C2.520e-544.44tRNA nucleotidyltransferase cca2-like n=1 Tax=Erig... [more]
A0A7J6FF93_CANSA2.550e-538.67PolyA_pol domain-containing protein n=5 Tax=Cannab... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.460.10coord: 51..105
e-value: 2.6E-5
score: 26.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig108325contigH-elongata_contig108325:111..428 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig108325.679.1mRNA_H-elongata_contig108325.679.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig108325 35..766 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig108325.679.1 ID=prot_H-elongata_contig108325.679.1|Name=mRNA_H-elongata_contig108325.679.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
MTEPAVATETRDRSSKRQRISNIQHMAASPIKHVHPLGDRQPRGVIRGSN
RFSSDLTMDISNSLTPTEAQVLGLMMEAVKHAESQTVVRIAGGWVRDKLL
GLQVK*
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