prot_H-elongata_contig107820.643.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig107820.643.1
Unique Nameprot_H-elongata_contig107820.643.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length132
Homology
BLAST of mRNA_H-elongata_contig107820.643.1 vs. uniprot
Match: A0A177WMM1_BATDL (Uncharacterized protein n=4 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=A0A177WMM1_BATDL)

HSP 1 Score: 66.6 bits (161), Expect = 3.580e-10
Identity = 38/134 (28.36%), Postives = 72/134 (53.73%), Query Frame = 0
Query:    3 FHQVLGHPAEQITRNTA-RMAGVQL----SRIWRPCVHCSESRVRRYAVPKSTENQADRRAGRLFINLSGPFHETSLGGNRFVMLCIDDFTRFKMVHFLKHKSDATNALRDIINDYFAPEDLKIGVIRTDGGGE 131
            +H+ LGH   +  +N A +  G+ +    ++    CV C E +  R+  PK + + A +    L ++L GPFH+T+LGG ++ ++ +DD++R+  ++ +  K       ++ +      +DL +  IRTD GGE
Sbjct:  523 WHKRLGHINVESIKNLADKSEGLDIIPGKTKERSQCVACIEGKAVRHPFPKRSTHVATQVNVLLHMDLEGPFHDTALGGYKYYLIIVDDYSRYSHLYPMISKDQTFQRFKEHVAAVELSKDLPVRAIRTDNGGE 656          
BLAST of mRNA_H-elongata_contig107820.643.1 vs. uniprot
Match: A0A5N6NZN2_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NZN2_9ASTR)

HSP 1 Score: 64.3 bits (155), Expect = 2.220e-9
Identity = 39/133 (29.32%), Postives = 65/133 (48.87%), Query Frame = 0
Query:    3 FHQVLGHPA----EQITRNTARMAGVQLSRIWRPCVHCSESRVRRYAVPKSTENQADRRAGRLFINLSGPFHETSLGGNRFVMLCIDDFTRFKMVHFLKHKSDATNALRDIINDYFAPEDLKIGVIRTDGGGE 131
            +H  LGH +    E I RN        +    + C  C  ++  R   P+ T  +A +    +  +L GP   +++GGN+F  L +DD++R+  V+ LK K++A    +          +LK+G +RTD GGE
Sbjct:  469 WHARLGHVSFATLEAIGRNNLVAGMPAIKHPKQVCEGCMVAKQTRLPFPQETTWRASKPLELIHADLCGPITPSTMGGNKFFFLLVDDYSRYMWVYLLKSKNEAFLNFKKFKATVEKESELKVGTLRTDRGGE 601          
BLAST of mRNA_H-elongata_contig107820.643.1 vs. uniprot
Match: A0A0V1LL02_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella nativa TaxID=6335 RepID=A0A0V1LL02_9BILA)

HSP 1 Score: 60.8 bits (146), Expect = 5.740e-9
Identity = 37/127 (29.13%), Postives = 59/127 (46.46%), Query Frame = 0
Query:    5 QVLGHPAEQITRNTARMAGVQLSRIWRPCVHCSESRVRRYAVPKSTENQADRRAGRLFINLSGPFHETSLGGNRFVMLCIDDFTRFKMVHFLKHKSDATNALRDIINDYFAPEDLKIGVIRTDGGGE 131
            Q  G P++ IT+                CV C + +  R   PKS   +++     +  ++ GP    S+GG R+ +  IDDF+R   V+FLKHK++A    +D I         ++  +RTD G E
Sbjct:   29 QATGIPSDAITKTD--------------CVTCLKGKQCRLPFPKSATKRSEEVLELVHSDICGPMQAASVGGARYFLSFIDDFSRKSFVYFLKHKNEALPKFKDFIAMVERQTSKRVKCLRTDNGRE 141          
BLAST of mRNA_H-elongata_contig107820.643.1 vs. uniprot
Match: A0A2B4R7Q8_STYPI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4R7Q8_STYPI)

HSP 1 Score: 62.4 bits (150), Expect = 1.020e-8
Identity = 40/134 (29.85%), Postives = 63/134 (47.01%), Query Frame = 0
Query:    3 FHQVLGHPAEQITRNTAR---MAGVQLSRIWRP--CVHCSESRVRRYAVPKSTENQADRRAGRLFINLSGPFHETSLGGNRFVMLCIDDFTRFKMVHFLKHKSDATNALRDIINDYFAPEDLKIGVIRTDGGGE 131
            +HQ LGH  E   +       + G+ + +I     C  C   ++ R   P   E ++ RR   +  ++ GP H  S+GG ++ +  IDD++R   VHF+KHKS+      +            IG +RTD GGE
Sbjct:  131 WHQRLGHVHELRLKKCVESESVRGINIKKITELSFCEGCLAGKMCRKPFPAVGEIRSTRRLQLVHSDVCGPMHTPSIGGAKYFVTFIDDYSRCCAVHFMKHKSEVLEKFVEFEASVTNDVGKAIGTLRTDNGGE 264          
BLAST of mRNA_H-elongata_contig107820.643.1 vs. uniprot
Match: A0A5N6PWF0_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PWF0_9ASTR)

HSP 1 Score: 62.4 bits (150), Expect = 1.040e-8
Identity = 31/99 (31.31%), Postives = 54/99 (54.55%), Query Frame = 0
Query:   33 CVHCSESRVRRYAVPKSTENQADRRAGRLFINLSGPFHETSLGGNRFVMLCIDDFTRFKMVHFLKHKSDATNALRDIINDYFAPEDLKIGVIRTDGGGE 131
            C  C   +  R + PK +  +A++    +  +L GP    +LGGNR+ ML +DD+TR+  V+ L+ K +A    +   N+     +LK+  +++D GGE
Sbjct:  496 CDACMLGKQARNSFPKKSLYRANKPFELVHTDLCGPISPPTLGGNRYFMLLVDDYTRYAWVYALRTKDEALGVFKKFKNEVELEHELKVKALKSDRGGE 594          
BLAST of mRNA_H-elongata_contig107820.643.1 vs. uniprot
Match: A0A177WWT4_BATDL (Uncharacterized protein n=1 Tax=Batrachochytrium dendrobatidis (strain JEL423) TaxID=403673 RepID=A0A177WWT4_BATDL)

HSP 1 Score: 62.4 bits (150), Expect = 1.040e-8
Identity = 36/134 (26.87%), Postives = 71/134 (52.99%), Query Frame = 0
Query:    3 FHQVLGHPAEQITRNTA-RMAGVQL----SRIWRPCVHCSESRVRRYAVPKSTENQADRRAGRLFINLSGPFHETSLGGNRFVMLCIDDFTRFKMVHFLKHKSDATNALRDIINDYFAPEDLKIGVIRTDGGGE 131
            +H+ LGH   +  +N A +  G+ +    ++    CV C + +  R+  PK + + A +    L ++L GPFH+T+LGG ++ ++ +DD++R+  ++ +  K       ++ +      + L +  IRTD GGE
Sbjct:  312 WHKRLGHINVESIKNLADKSEGLDIIPGKTKERSQCVACIKGKAVRHPFPKRSTHVATQVNVLLHMDLEGPFHDTALGGYKYYLIIVDDYSRYSHLYPMISKDQTFQRFKEHVAAVELSKGLPVRAIRTDNGGE 445          
BLAST of mRNA_H-elongata_contig107820.643.1 vs. uniprot
Match: A0A2B4R8Q4_STYPI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4R8Q4_STYPI)

HSP 1 Score: 62.4 bits (150), Expect = 1.050e-8
Identity = 40/134 (29.85%), Postives = 63/134 (47.01%), Query Frame = 0
Query:    3 FHQVLGHPAEQITRNTAR---MAGVQLSRIWRP--CVHCSESRVRRYAVPKSTENQADRRAGRLFINLSGPFHETSLGGNRFVMLCIDDFTRFKMVHFLKHKSDATNALRDIINDYFAPEDLKIGVIRTDGGGE 131
            +HQ LGH  E   +       + G+ + +I     C  C   ++ R   P   E ++ RR   +  ++ GP H  S+GG ++ +  IDD++R   VHF+KHKS+      +            IG +RTD GGE
Sbjct:  140 WHQRLGHVHELRLKKCVESESVRGINIKKITELSFCEGCLAGKMCRKPFPAVGEIRSTRRLQLVHSDVCGPMHTPSIGGAKYFVTFIDDYSRCCAVHFMKHKSEVLEKFVEFEASVTNDVGKAIGTLRTDNGGE 273          
BLAST of mRNA_H-elongata_contig107820.643.1 vs. uniprot
Match: A0A177VYH4_BATDL (Uncharacterized protein (Fragment) n=5 Tax=Batrachochytrium dendrobatidis (strain JEL423) TaxID=403673 RepID=A0A177VYH4_BATDL)

HSP 1 Score: 62.4 bits (150), Expect = 1.070e-8
Identity = 36/134 (26.87%), Postives = 71/134 (52.99%), Query Frame = 0
Query:    3 FHQVLGHPAEQITRNTA-RMAGVQL----SRIWRPCVHCSESRVRRYAVPKSTENQADRRAGRLFINLSGPFHETSLGGNRFVMLCIDDFTRFKMVHFLKHKSDATNALRDIINDYFAPEDLKIGVIRTDGGGE 131
            +H+ LGH   +  +N A +  G+ +    ++    CV C + +  R+  PK + + A +    L ++L GPFH+T+LGG ++ ++ +DD++R+  ++ +  K       ++ +      + L +  IRTD GGE
Sbjct:  523 WHKRLGHINVESIKNLADKSEGLDIIPGKTKERSQCVACIKGKAVRHPFPKRSTHVATQVNVLLHMDLEGPFHDTALGGYKYYLIIVDDYSRYSHLYPMISKDQTFQRFKEHVAAVELSKGLPVRAIRTDNGGE 656          
BLAST of mRNA_H-elongata_contig107820.643.1 vs. uniprot
Match: A0A6L2LZS5_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2LZS5_TANCI)

HSP 1 Score: 62.4 bits (150), Expect = 1.070e-8
Identity = 28/100 (28.00%), Postives = 53/100 (53.00%), Query Frame = 0
Query:   32 PCVHCSESRVRRYAVPKSTENQADRRAGRLFINLSGPFHETSLGGNRFVMLCIDDFTRFKMVHFLKHKSDATNALRDIINDYFAPEDLKIGVIRTDGGGE 131
            PC  C + + +R + P    + + +R   L +NL GP    S+ G R+V++ +DD++R+  VHFL+ K +    + +++          + ++RTD G E
Sbjct:  636 PCPSCEQGKSKRASHPPKPFSNSKQRLHLLHMNLCGPMRVASINGKRYVLVIVDDYSRYTWVHFLRIKEETPVVITNLLKKISVRLQAPVIIVRTDNGTE 735          
BLAST of mRNA_H-elongata_contig107820.643.1 vs. uniprot
Match: A0A0A9WVR3_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9WVR3_LYGHE)

HSP 1 Score: 61.6 bits (148), Expect = 1.750e-8
Identity = 29/100 (29.00%), Postives = 59/100 (59.00%), Query Frame = 0
Query:   32 PCVHCSESRVRRYAVPKSTENQADRRAGRLFINLSGPFHETSLGGNRFVMLCIDDFTRFKMVHFLKHKSDATNALRDIINDYFAPEDLKIGVIRTDGGGE 131
            PC  C + +  R    K++ ++A    G +  ++ GP  E S+GG+R+ ++ +DDF+R+  V+F+ +K++    + + I+      + K+ ++R+DGGGE
Sbjct:  107 PCEVCLKGKQPRRPF-KTSGSRAKELLGVVHADVCGPMEEASIGGSRYFLVLVDDFSRYTHVYFMSNKNEVNGLIEEFISLVERQTEKKMKILRSDGGGE 205          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig107820.643.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A177WMM1_BATDL3.580e-1028.36Uncharacterized protein n=4 Tax=Batrachochytrium d... [more]
A0A5N6NZN2_9ASTR2.220e-929.32Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
A0A0V1LL02_9BILA5.740e-929.13Retrovirus-related Pol polyprotein from transposon... [more]
A0A2B4R7Q8_STYPI1.020e-829.85Retrovirus-related Pol polyprotein from transposon... [more]
A0A5N6PWF0_9ASTR1.040e-831.31Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
A0A177WWT4_BATDL1.040e-826.87Uncharacterized protein n=1 Tax=Batrachochytrium d... [more]
A0A2B4R8Q4_STYPI1.050e-829.85Retrovirus-related Pol polyprotein from transposon... [more]
A0A177VYH4_BATDL1.070e-826.87Uncharacterized protein (Fragment) n=5 Tax=Batrach... [more]
A0A6L2LZS5_TANCI1.070e-828.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A0A9WVR3_LYGHE1.750e-829.00Retrovirus-related Pol polyprotein from transposon... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 47..131
e-value: 3.4E-7
score: 31.7
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 56..131

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig107820contigH-elongata_contig107820:425..820 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig107820.643.1mRNA_H-elongata_contig107820.643.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig107820 419..1024 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig107820.643.1 ID=prot_H-elongata_contig107820.643.1|Name=mRNA_H-elongata_contig107820.643.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp
MKFHQVLGHPAEQITRNTARMAGVQLSRIWRPCVHCSESRVRRYAVPKST
ENQADRRAGRLFINLSGPFHETSLGGNRFVMLCIDDFTRFKMVHFLKHKS
DATNALRDIINDYFAPEDLKIGVIRTDGGGE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR012337RNaseH-like_sf