prot_H-elongata_contig10775.638.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig10775.638.1
Unique Nameprot_H-elongata_contig10775.638.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length358
Homology
BLAST of mRNA_H-elongata_contig10775.638.1 vs. uniprot
Match: A0A6H5K8T1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8T1_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 8.830e-22
Identity = 78/273 (28.57%), Postives = 114/273 (41.76%), Query Frame = 0
Query:   16 EYLVLMRLPLNPTHKTLARFDAFERLREEWGVVAKWEFKVGSPPHGLVERLVASCHAIGNVVMDTCWRRGACFVCHEASLDAAGG--YFALALQFTPSTTSNTPTAGTLVVQAFGNREGRALWGALRFVISAAWDIFQEFPGLRWEAWVECPEHGQLQHYLPCVNDREEMSPARPIIRPRERPNCGCPKGVASRLGTVLQRSPEWGPSPLEVVFNTGDEGRQHAQSFDDDGERRFTAALDITLKAPQETPIVDEASESEG------WRTPEWV 280
            + LV+MRL           FD          V  KWEF    PP+GL+ERL+ASCH +G V    CWR GA F  H+          ++ +AL    S TS   +      + FG  +   +W A+R+V SA  ++ +E+PG+ W  W++C +H     Y+    +     P  P   P  R  C C        G VL+ + E     L  V +TG +               F    D   + P+ET   +   E+ G      WRT +W+
Sbjct:  482 DMLVIMRLSETCNEHQRTLFDGLASKMPRDRVTLKWEFDKAGPPYGLIERLIASCHVLGEVETGACWRYGAVFQSHDMRFVEGRNVRFYKIAL----SMTSYNESERVFTAKVFGPLDSERVWVAIRYVASAMINLSKEWPGVLWTGWLDCEKHPSQHLYMASSVEARVGDPLLPAAAPDAR-RCDC----LLEPGGVLRLAVE----ELGPVIDTGKDP--------------FEGLSDEDTEDPEETVTCNCVREAFGHWLPHAWRTAKWL 727          
BLAST of mRNA_H-elongata_contig10775.638.1 vs. uniprot
Match: A0A6H5JW02_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW02_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 7.950e-16
Identity = 71/242 (29.34%), Postives = 108/242 (44.63%), Query Frame = 0
Query:   15 EEYLVLMRLP--LNPTHKTLARFDAFERLREEWGVVAKWEFKVGSPPHGLVERLVASCHAIGNVVMDTCWRRGACFVCHE-ASLDAAGGYFALALQFTPSTTSNTPTAGTLVVQAFGNREGRALWGALRFVISAAWDIFQEFPGLRWEAWVECPEHGQLQHYLPCVNDREEMSP--ARPIIRPRERPNCGCPKGVASRLGTVLQRSPEWGPSPLEVVFNTGDEGRQHAQSFDDDGERRFTAA 251
            ++ LV+MRLP      H+         R   +  V   W F    PP+GLVER++ASCHA+G V M  CWR GA F     A+ D +   +   +++  S   N      L ++ FG  +   +W ALR+V S+  +I +++PG+ WE W +C    + + Y    +D+  +             R  C C     + L  VL+R        L  V +T     Q   + D +G RR  AA
Sbjct:  629 QDMLVIMRLPETCGAEHELQELISDQMRRHSDREVTLMWRFDSAGPPYGLVERVIASCHAVGVVEMGLCWRYGAVFQSRAMATSDGSDRLYTFVVRY-DSAVGNERRI--LSMRMFGPLQDNRVWAALRWVASSVVNISKDWPGVLWEGWPQCARRHRNRTYF-ATSDKASIGDFLLADAATGATRRGCDCLAVEGTVLRLVLER--------LGKVVDT-----QAPPASDVEGVRRTKAA 853          
BLAST of mRNA_H-elongata_contig10775.638.1 vs. uniprot
Match: D7FVX5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVX5_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 1.580e-14
Identity = 66/214 (30.84%), Postives = 93/214 (43.46%), Query Frame = 0
Query:    9 ASWGHI--EEYLVLMRLPLNPTHKTLARFDAFER-LREEWG---VVAKWEFKVGSPPHGLVERLVASCHAIGNVVMDTCWRRGACFVCHEASLDAAGGY-FALALQFTPSTTSNTPTAGTLVVQAFGNREGRALWGALRFVISAAWDIFQEFPGLRWEAWVECPEHGQLQHYLPCVNDREEMSPARPIIRPRERPN-CGCPKGVASRLGTVLQR 214
            A+ G I  ++ LV+MRLP               R L E  G   V  KW F      HGLVER++ASCH +G+V    CWR GA F  +  + D    + ++  +++     S       L V  FG      LW ALR+V S+  +    +PG+RWE    C  H + + Y     +     P      PR  PN C C     + +  VL+R
Sbjct:  779 AAHGQIGRQDMLVIMRLPDTCEENIQGELQELVRDLSERHGGNEVTLKWRFDGAGASHGLVERVIASCHEVGSVRSGLCWRYGAVFQSYARADDGGLNWLYSFVIRYDEEVGSGERV---LAVTMFGPTAEDRLWAALRWVASSVVNTSTGWPGVRWEGGPACAIHARGRMYFKTPIEARIGDPILTDPDPRTAPNVCDCYTTEGNAMRLVLER 989          
BLAST of mRNA_H-elongata_contig10775.638.1 vs. uniprot
Match: D7FZA1_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA1_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 4.050e-9
Identity = 48/131 (36.64%), Postives = 69/131 (52.67%), Query Frame = 0
Query:   49 AKWEFKVGSPPHGLVERLVASCHAIGNVVMDTCWRRGACFVCHEASLDAAG-GYFALALQFTPSTTSNTPTAGTLVVQAFGNREGRALWGALRFVISAAWDIFQEFPGLRWEAWVECPEHGQLQHYLPCVN 178
            A WE  +G PP G +E+++  C  +G+V   T WR G   + H    D  G G FA+  ++  S+T+N  TA     Q FG+    A W AL +V SA   +  +FPGLRW   ++CP+HG    +   VN
Sbjct:  583 ASWEIFLGVPP-GAIEKVLTRCCGLGDV--QTFWRYGV--LVHGGLGDLDGRGIFAVVTEY--SSTNNELTA-----QIFGDISTSAPWVALSYVTSAVSLMLMDFPGLRWNGSLKCPQHGYEMPFATKVN 701          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10775.638.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K8T1_9PHAE8.830e-2228.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JW02_9PHAE7.950e-1629.34Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FVX5_ECTSI1.580e-1430.84LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7FZA1_ECTSI4.050e-936.64LRR-GTPase of the ROCO family, incomplete sequence... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 316..338
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 339..357
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..315
NoneNo IPR availableTMHMMTMhelixcoord: 316..338
NoneNo IPR availableTMHMMTMhelixcoord: 284..301

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10775contigH-elongata_contig10775:4668..7671 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10775.638.1mRNA_H-elongata_contig10775.638.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig10775 3427..8987 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig10775.638.1 ID=prot_H-elongata_contig10775.638.1|Name=mRNA_H-elongata_contig10775.638.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=358bp
MNKACVRTASWGHIEEYLVLMRLPLNPTHKTLARFDAFERLREEWGVVAK
WEFKVGSPPHGLVERLVASCHAIGNVVMDTCWRRGACFVCHEASLDAAGG
YFALALQFTPSTTSNTPTAGTLVVQAFGNREGRALWGALRFVISAAWDIF
QEFPGLRWEAWVECPEHGQLQHYLPCVNDREEMSPARPIIRPRERPNCGC
PKGVASRLGTVLQRSPEWGPSPLEVVFNTGDEGRQHAQSFDDDGERRFTA
ALDITLKAPQETPIVDEASESEGWRTPEWVKSTLVAGPMGILALYETWVP
LLKVADYWREGALVKAITLTLFAMVLAITVAVAAAAFFKKLRLKYGLWPP
RTNMKND*
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