prot_H-elongata_contig10757.624.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig10757.624.1
Unique Nameprot_H-elongata_contig10757.624.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length222
Homology
BLAST of mRNA_H-elongata_contig10757.624.1 vs. uniprot
Match: D7FPL9_ECTSI (Polyribonucleotide nucleotidyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPL9_ECTSI)

HSP 1 Score: 296 bits (759), Expect = 8.720e-93
Identity = 159/226 (70.35%), Postives = 181/226 (80.09%), Query Frame = 0
Query:    1 TVLCPLQLDVKLRGGVPLGILGEALKTAKAGRTRVLAAMKQAITAPNYELKDRAPRCEIVRFEPDRKKDIVGFQGQTLKGIEEKYGVSLDLSMEGRAVVFADDADSVKKAVKLVRELVHEIEEGDIFSGTVKTVHEYGCLVELLRNQQGLLHVSNMANTTPAPPARDLVKVGDRVDVRVVEVDRLRGLIKLVK-----GKSSEPGERPSRQKLVEAENEEMQHAGQ 221
            T +  +QLDVKLRGGVPL +L EAL+ AKAGR +VL AMK+AI +PN  LKDRAPRCEIV FE DRKKD+VGFQGQT+KGIEE +GV+LDLS EGRAVVF+D+A SV  AV+LVRELVHEIEEGD + GTV TVHEYGCLVELLRNQQGLLHVSNM +  PAPPARD+VKVGD V VRV+EVDRLRGLIKL         +S+PG+   R   V  E+EEMQ A Q
Sbjct:  539 TGITAIQLDVKLRGGVPLPVLSEALRVAKAGRAQVLKAMKKAIGSPNGTLKDRAPRCEIVHFEADRKKDLVGFQGQTMKGIEENFGVALDLSTEGRAVVFSDNAQSVAGAVRLVRELVHEIEEGDFYEGTVTTVHEYGCLVELLRNQQGLLHVSNMTDKLPAPPARDIVKVGDTVGVRVMEVDRLRGLIKLASESHPSSSTSKPGQ-GRRSPTVAGEDEEMQKASQ 763          
BLAST of mRNA_H-elongata_contig10757.624.1 vs. uniprot
Match: A0A7S3PD14_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PD14_9STRA)

HSP 1 Score: 137 bits (346), Expect = 6.840e-37
Identity = 78/197 (39.59%), Postives = 121/197 (61.42%), Query Frame = 0
Query:    6 LQLDVKLRGGVPLGILGEALKTAKAGRTRVLAAMKQAIT---APNYELKDRAPRCEIVRFEPDRKKDIVGFQGQTLKGIEEKYGVSLDLSMEGRAVVFADDADSVKKAVKLVRELVHEIEEGDIFSGTVKTVHEYGCLVELLRNQQGLLHVSNMANTTPAPP--------ARDLVKVGDRVDVRVVEVDRLRGLIKL 191
            LQLDVK    V   IL  ALK AKAGR  +L  M+  +     P  + K  AP  E+V+F+  RK+D++G  G  L+ +E++Y VS+DL+ EGR +++ +D   VKKA   V +LV +++EG+I+ GT+  + ++G +VELLRN++ LLHVS + + +             RD +KVG  +DV+ + VD ++G IK+
Sbjct:   15 LQLDVK--EPVETRILSAALKLAKAGRNVILDEMEMKLERGFVPRSQPKMSAPAVEVVKFDASRKRDLIGPGGVVLRQLEDRYSVSIDLTQEGRCLLYGEDRGLVKKARSTVMDLVADVQEGEIYEGTIVELKDFGAVVELLRNKEALLHVSELTDESEVKDHPEGIAGFVRDNLKVGQTIDVQCIGVDPIQGSIKV 209          
BLAST of mRNA_H-elongata_contig10757.624.1 vs. uniprot
Match: B8C7U5_THAPS (Polyribonucleotide nucleotidyltransferase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C7U5_THAPS)

HSP 1 Score: 142 bits (358), Expect = 1.400e-35
Identity = 79/198 (39.90%), Postives = 128/198 (64.65%), Query Frame = 0
Query:    6 LQLDVKLRGGVPLGILGEALKTAKAGRTRVLAAMKQAITA--PNYELKDRAPRCEIVRFEPDRKKDIVGFQGQTLKGIEEKYGVSLDLSMEGRAVVFADDADSVKKAVKLVRELVHEIEEGDIFSGTVKTVHEYGCLVELLRNQQGLLHVSNMANTTPAPPA------RDLVKVGDRVDVRVVEVDRLRGLIKLVKGK 195
            +QLDVK    V + ++  AL  AK GR  +LAAM + +    P   +K  APR E+V+F+P+RK+D++G  G  L+ +E+++ VSLDLS +G  ++F     +V  A +++ +LV ++EEG ++ GTV  + ++G +VELLRN++GLLHVS +A+ T   P       RD +KVGD+++V   ++D ++G IKL + K
Sbjct:  457 MQLDVK--NPVTMKVIASALSLAKDGRNAILAAMGKEVGGLHPRRSMKSTAPRIEVVKFDPNRKRDLIGPGGSVLRQLEDRFNVSLDLSQDG--LIFGA-LQAVSGAKRVIMDLVADVEEGGVYEGTVIEIKDFGAVVELLRNKEGLLHVSELADKTEKHPEGNMGLLRDHLKVGDKIEVLCTKIDHVQGSIKLSRKK 649          
BLAST of mRNA_H-elongata_contig10757.624.1 vs. uniprot
Match: A0A645FZL9_9ZZZZ (Polyribonucleotide nucleotidyltransferase n=1 Tax=bioreactor metagenome TaxID=1076179 RepID=A0A645FZL9_9ZZZZ)

HSP 1 Score: 134 bits (336), Expect = 3.550e-35
Identity = 76/212 (35.85%), Postives = 130/212 (61.32%), Query Frame = 0
Query:    6 LQLDVKLRGGVPLGILGEALKTAKAGRTRVLAAMKQAITAPNYELKDRAPRCEIVRFEPDRKKDIVGFQGQTLKGIEEKYGVSLDLSMEGRAVVFADDADSVKKAVKLVRELVHEIEEGDIFSGTVKTVHEYGCLVELLRNQQGLLHVSNMANTTPAPPARDLVKVGDRVDVRVVEVDRLRGLIKLVKGKSSEPGERPSRQKLVEAENEEMQ 217
            +Q+D+K+ GG+   IL  AL+ AK+GR  +L  M + ++ P  EL   APR   +  +PD+ +D++G  G+T+K I ++ GV++D+  +G+  + A D ++ +KAV+++  LV E+E G I+ G V  +  +G  VE+L  ++GL+H+S +A    A    D+VKVGD + V+VVE+DR +G + L            SR++L++AE +  Q
Sbjct:   40 IQMDIKI-GGINKAILTAALEQAKSGRKHILGKMLEVLSQPRSELSPYAPRIITMEIDPDKIRDVIGPGGKTIKKIIDETGVTIDIEDDGKVFIAAVDVEAGQKAVRIIETLVREVEVGGIYLGKVTRLMNFGAFVEILPGKEGLVHISQLALERVAK-VEDVVKVGDEIMVKVVEIDR-QGRVNL------------SRKELLKAEQDNKQ 236          
BLAST of mRNA_H-elongata_contig10757.624.1 vs. uniprot
Match: A0A3D3QRM9_9FIRM (Polyribonucleotide nucleotidyltransferase (Fragment) n=2 Tax=Tissierellales TaxID=1737405 RepID=A0A3D3QRM9_9FIRM)

HSP 1 Score: 132 bits (332), Expect = 1.480e-34
Identity = 64/178 (35.96%), Postives = 112/178 (62.92%), Query Frame = 0
Query:    6 LQLDVKLRGGVPLGILGEALKTAKAGRTRVLAAMKQAITAPNYELKDRAPRCEIVRFEPDRKKDIVGFQGQTLKGIEEKYGVSLDLSMEGRAVVFADDADSVKKAVKLVRELVHEIEEGDIFSGTVKTVHEYGCLVELLRNQQGLLHVSNMANTTPAPPARDLVKVGDRVDVRVVEVD 183
            +Q+D+K+ G +   IL EAL+ A+ GR  +L  M++ I  P  EL   APR   ++  PDR +DI+G  G+ +  I ++ GV +D+  +GR  + ++D +  KKA++++ ++V E+E G+I++G V  +  +G  VE+L  ++GL+H+S +A         D+VKVGD + V+V+E+D
Sbjct:   42 IQMDIKIPG-IDEPILKEALEKARIGRLYILDKMEETIKTPRTELSPYAPRIHTLQINPDRIRDIIGPGGKVINRIIDETGVKIDIEDDGRVAIVSNDGEGAKKAIQMIMDIVKEVEAGEIYTGKVTKIMNFGAFVEVLNGKEGLVHISQLAKER-VNKVEDVVKVGDEITVKVMEID 217          
BLAST of mRNA_H-elongata_contig10757.624.1 vs. uniprot
Match: A0A1F7NTH0_9BACT (Polyribonucleotide nucleotidyltransferase n=2 Tax=unclassified Candidatus Rokubacteria TaxID=2760815 RepID=A0A1F7NTH0_9BACT)

HSP 1 Score: 135 bits (340), Expect = 5.110e-33
Identity = 71/178 (39.89%), Postives = 116/178 (65.17%), Query Frame = 0
Query:    6 LQLDVKLRGGVPLGILGEALKTAKAGRTRVLAAMKQAITAPNYELKDRAPRCEIVRFEPDRKKDIVGFQGQTLKGIEEKYGVSLDLSMEGRAVVFADDADSVKKAVKLVRELVHEIEEGDIFSGTVKTVHEYGCLVELLRNQQGLLHVSNMANTTPAPPARDLVKVGDRVDVRVVEVD 183
            LQ+D+K+ GGV L I+ EALK A+  R  VLA M++AI  P  EL   APR   ++   ++ ++I+G  G+ ++GI+E+ G  +D+  +GR  VF+ D +SV+KA+ +++++  E+E   I+ G VK + E+G  VE+L N +GLLH+S +A +      +D++  GD V V+V+EVD
Sbjct:  502 LQMDIKI-GGVSLEIMREALKQAREARLSVLAKMREAIEKPRTELSPYAPRFVTIKIRTEKIREIIGPGGKVIRGIQEQTGTKIDVEDDGRVTVFSPDNESVQKALAIIQDICREVELDRIYLGKVKKIVEFGAFVEVLPNTEGLLHISQIAESR-IRSVQDVLTEGDEVLVKVIEVD 677          
BLAST of mRNA_H-elongata_contig10757.624.1 vs. uniprot
Match: UPI0019CD9616 (Polyribonucleotide nucleotidyltransferase n=1 Tax=Clostridia bacterium TaxID=2044939 RepID=UPI0019CD9616)

HSP 1 Score: 135 bits (339), Expect = 6.930e-33
Identity = 68/179 (37.99%), Postives = 119/179 (66.48%), Query Frame = 0
Query:    6 LQLDVKLRGGVPLGILGEALKTAKAGRTRVLAAMKQAITAPNYELKDRAPRCEIVRFEPDRKKDIVGFQGQTLKGIEEKYGVSLDLSMEGRAVVFADDADSVKKAVKLVRELVHEIEEGDIFSGTVKTVHEYGCLVELLRNQQGLLHVSNMANTTPAPPARDLVKVGDRVDVRVVEVDR 184
            +Q+D+K+  G+  G+L +AL+ A+ GR  +L  M++ + AP  E+   APR   V+ +PD+ + I+G  G+T+KGI ++ G S+D++ +G   V + D+++VK+A++++  L  E E G I+ GT+K + ++G  VE+L N + LLHVS +A+     PA D++K GD +DV+V+ V+R
Sbjct:  506 IQMDIKI-AGLERGVLEQALQQAREGRLHILGKMQETLNAPRVEINRWAPRITTVKVKPDQIRIIIGPGGKTIKGIIDQTGCSVDVNDDGTVAVASADSEAVKRAIQIIEGLTAEPEVGRIYRGTIKRLVDFGAFVEILPNNEALLHVSEIAHERIENPA-DVLKEGDEIDVKVISVER 682          
BLAST of mRNA_H-elongata_contig10757.624.1 vs. uniprot
Match: A0A353V7P0_9BACT (Polyribonucleotide nucleotidyltransferase n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A353V7P0_9BACT)

HSP 1 Score: 134 bits (337), Expect = 1.310e-32
Identity = 71/178 (39.89%), Postives = 115/178 (64.61%), Query Frame = 0
Query:    6 LQLDVKLRGGVPLGILGEALKTAKAGRTRVLAAMKQAITAPNYELKDRAPRCEIVRFEPDRKKDIVGFQGQTLKGIEEKYGVSLDLSMEGRAVVFADDADSVKKAVKLVRELVHEIEEGDIFSGTVKTVHEYGCLVELLRNQQGLLHVSNMANTTPAPPARDLVKVGDRVDVRVVEVD 183
            LQ+D+K+  GV L I+ EALK A+  R  VLA M++AI  P  EL   APR   ++   ++ ++I+G  G+ ++GI+E+ G  +D+  +GR  VF+ D +SV+KA+ +++++  E+E   I+ G VK + E+G  VE+L N +GLLH+S +A T      +D++  GD V V+V+EVD
Sbjct:  502 LQMDIKI-AGVSLEIMREALKQAREARLLVLAKMREAIEKPRPELSPYAPRFVTIKIRTEKIREIIGPGGKVIRGIQEQTGTKIDVEDDGRVTVFSPDNESVQKALAIIQDICREVELDRIYLGKVKKIVEFGAFVEVLPNTEGLLHISQIAETR-IRSVQDVLSEGDEVLVKVIEVD 677          
BLAST of mRNA_H-elongata_contig10757.624.1 vs. uniprot
Match: A0A7X8C2S9_9LACT (Polyribonucleotide nucleotidyltransferase n=1 Tax=Globicatella sulfidifaciens TaxID=136093 RepID=A0A7X8C2S9_9LACT)

HSP 1 Score: 128 bits (322), Expect = 1.840e-32
Identity = 63/178 (35.39%), Postives = 108/178 (60.67%), Query Frame = 0
Query:    6 LQLDVKLRGGVPLGILGEALKTAKAGRTRVLAAMKQAITAPNYELKDRAPRCEIVRFEPDRKKDIVGFQGQTLKGIEEKYGVSLDLSMEGRAVVFADDADSVKKAVKLVRELVHEIEEGDIFSGTVKTVHEYGCLVELLRNQQGLLHVSNMANTTPAPPARDLVKVGDRVDVRVVEVD 183
            LQ+D+K++G +   IL EAL+ AK  R  +L  +   +  P  EL   AP+ E++  +PD+ K ++G  G+T+ GI +  GV +D+   G   V + DA+ ++KA+ ++  LV E+E G+ + G V+ + ++G  VE+L  + GLLH+S + +        D++KVGD V V+V+E+D
Sbjct:  110 LQMDIKIQG-ITEAILTEALEQAKKARAEILDELISTLAEPRKELSPYAPKIELITIDPDKIKVVIGRGGETINGIIDATGVKIDIDQSGAISVASSDAEMIQKAIDMINALVKEVEVGETYEGIVRRIEKFGAFVEVLPGKDGLLHISELEHRR-VNNVEDVLKVGDTVQVKVIEID 285          
BLAST of mRNA_H-elongata_contig10757.624.1 vs. uniprot
Match: A0A4Q5XCR5_9DELT (Polyribonucleotide nucleotidyltransferase n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A4Q5XCR5_9DELT)

HSP 1 Score: 132 bits (333), Expect = 4.870e-32
Identity = 67/179 (37.43%), Postives = 118/179 (65.92%), Query Frame = 0
Query:    6 LQLDVKLRGGVPLGILGEALKTAKAGRTRVLAAMKQAITAPNYELKDRAPRCEIVRFEPDRKKDIVGFQGQTLKGIEEKYGVSLDLSMEGRAVVFADDADSVKKAVKLVRELVHEIEEGDIFSGTVKTVHEYGCLVELLRNQQGLLHVSNMANTTPAPPARDLVKVGDRVDVRVVEVDR 184
            +Q+D+K+ G +   +L +AL+ A+AGR  +L  M + ++ P  E+   APR   V+ +PD+ + I+G  G+T+KGI ++ G S+D++ +G   V + D+D+VK+A++++  L  E E G I+ GT+K + ++G  VE+L N + LLHVS +A+     PA D++K GD ++V+V+ V+R
Sbjct:  506 IQMDIKIEG-LERRVLEQALEQARAGRVHILGKMAETLSVPRVEINRWAPRITTVKVKPDQIRIIIGPGGKTIKGIIDQTGCSVDVNDDGTVAVASADSDAVKRAIQIIEGLTAEPEVGRIYKGTIKRLVDFGAFVEILPNNEALLHVSEIAHERIENPA-DVLKEGDEIEVKVISVER 682          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10757.624.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPL9_ECTSI8.720e-9370.35Polyribonucleotide nucleotidyltransferase n=2 Tax=... [more]
A0A7S3PD14_9STRA6.840e-3739.59Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
B8C7U5_THAPS1.400e-3539.90Polyribonucleotide nucleotidyltransferase (Fragmen... [more]
A0A645FZL9_9ZZZZ3.550e-3535.85Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
A0A3D3QRM9_9FIRM1.480e-3435.96Polyribonucleotide nucleotidyltransferase (Fragmen... [more]
A0A1F7NTH0_9BACT5.110e-3339.89Polyribonucleotide nucleotidyltransferase n=2 Tax=... [more]
UPI0019CD96166.930e-3337.99Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
A0A353V7P0_9BACT1.310e-3239.89Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
A0A7X8C2S9_9LACT1.840e-3235.39Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
A0A4Q5XCR5_9DELT4.870e-3237.43Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004087K Homology domainSMARTSM00322kh_6coord: 54..119
e-value: 0.0016
score: 27.7
IPR022967RNA-binding domain, S1SMARTSM00316S1_6coord: 122..194
e-value: 1.7E-12
score: 57.5
NoneNo IPR availableGENE3D2.40.50.140coord: 123..193
e-value: 3.4E-16
score: 61.1
NoneNo IPR availablePANTHERPTHR11252:SF0POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE 1, MITOCHONDRIALcoord: 6..195
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 70..114
score: 8.764
IPR027408PNPase/RNase PH domain superfamilyGENE3D3.30.230.70coord: 2..52
e-value: 1.8E-6
score: 28.9
IPR003029S1 domainPFAMPF00575S1coord: 121..189
e-value: 2.4E-12
score: 47.0
IPR003029S1 domainPROSITEPS50126S1coord: 124..194
score: 17.141
IPR036612K Homology domain, type 1 superfamilyGENE3D3.30.1370.10coord: 53..122
e-value: 1.8E-10
score: 42.5
IPR036612K Homology domain, type 1 superfamilySUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 59..142
IPR012162Polyribonucleotide nucleotidyltransferasePANTHERPTHR11252POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASEcoord: 6..195
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 119..193

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10757contigH-elongata_contig10757:6045..8953 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10757.624.1mRNA_H-elongata_contig10757.624.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig10757 6045..8953 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig10757.624.1 ID=prot_H-elongata_contig10757.624.1|Name=mRNA_H-elongata_contig10757.624.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=222bp
TVLCPLQLDVKLRGGVPLGILGEALKTAKAGRTRVLAAMKQAITAPNYEL
KDRAPRCEIVRFEPDRKKDIVGFQGQTLKGIEEKYGVSLDLSMEGRAVVF
ADDADSVKKAVKLVRELVHEIEEGDIFSGTVKTVHEYGCLVELLRNQQGL
LHVSNMANTTPAPPARDLVKVGDRVDVRVVEVDRLRGLIKLVKGKSSEPG
ERPSRQKLVEAENEEMQHAGQ*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004087KH_dom
IPR022967S1_dom
IPR027408PNPase/RNase_PH_dom_sf
IPR003029S1_domain
IPR036612KH_dom_type_1_sf
IPR012162PNPase
IPR012340NA-bd_OB-fold