prot_H-elongata_contig1067.548.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig1067.548.1
Unique Name	prot_H-elongata_contig1067.548.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	157

Homology

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BLAST of mRNA_H-elongata_contig1067.548.1 vs. uniprot
Match: D8LPP6_ECTSI (AP complex subunit sigma n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPP6_ECTSI)

HSP 1 Score: 300 bits (768), Expect = 7.220e-103
Identity = 149/157 (94.90%), Postives = 153/157 (97.45%), Query Frame = 0

Query:    1 MIKFVLMVNKMGQTRVSTYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVDSDDDNELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDKVAH-GDSGFGSKST 156
            MIKFVLMVNKMGQTRVS+YYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVDSDD+NELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMD  +H GDS FGSKS+
Sbjct:    1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVDSDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDSSSHAGDSVFGSKSS 157

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BLAST of mRNA_H-elongata_contig1067.548.1 vs. uniprot
Match: A0A835Z9B6_9STRA (AP complex subunit sigma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9B6_9STRA)

HSP 1 Score: 275 bits (702), Expect = 8.080e-93
Identity = 136/156 (87.18%), Postives = 148/156 (94.87%), Query Frame = 0

Query:    1 MIKFVLMVNKMGQTRVSTYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVDSDDDNELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDKV-AHGDSGFGSKS 155
            MIKFVLMVNKMGQTRVS+YY+W+PIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGV   SD++NELG+LEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMV+NG +CE NR+N+LKPL LMDKV A+ D+GFGSKS
Sbjct:    1 MIKFVLMVNKMGQTRVSSYYEWLPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVD-SSDEENELGMLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVMNGCVCEANRDNILKPLQLMDKVSANDDAGFGSKS 155

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BLAST of mRNA_H-elongata_contig1067.548.1 vs. uniprot
Match: A0A7S2UUI5_9STRA (AP complex subunit sigma n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUI5_9STRA)

HSP 1 Score: 235 bits (600), Expect = 2.470e-77
Identity = 110/154 (71.43%), Postives = 135/154 (87.66%), Query Frame = 0

Query:    1 MIKFVLMVNKMGQTRVSTYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVDSDDDNELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDKVAHGDSGFGSK 154
            MIKF+LMVNK GQTR+S+Y++WM IPERVALE+E++R+C SR+E QCSF E+RGY++IYRRYASLFFIVGVG  +D++NELGVLEFIH LVETLDKYF+SVCELDIMFN+EK HFILDEMV+NGYI E NR N+LKP+  MDK+A+ +    S+
Sbjct:    1 MIKFILMVNKQGQTRLSSYFEWMTIPERVALESEIIRKCLSRAEYQCSFLEYRGYRVIYRRYASLFFIVGVG--ADEENELGVLEFIHSLVETLDKYFESVCELDIMFNMEKAHFILDEMVMNGYIMETNRTNILKPIAQMDKMANSEDSIFSR 152

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BLAST of mRNA_H-elongata_contig1067.548.1 vs. uniprot
Match: F0Y567_AURAN (AP complex subunit sigma n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y567_AURAN)

HSP 1 Score: 227 bits (578), Expect = 5.560e-74
Identity = 105/144 (72.92%), Postives = 127/144 (88.19%), Query Frame = 0

Query:    2 IKFVLMVNKMGQTRVSTYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVDSDDDNELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDKVA 145
            I+F+LMVNK GQTR+STYY+W+P+PERVALE+E++R+C SRSE QCSF E+RGYK++YRRYASLFFIVG   + D +NELG+LEFIH LVETLDKYF+SVCELDIMFNLEK HFILDEMV+NG I E N+ NVLKP+ LM+K +
Sbjct:    3 IRFILMVNKQGQTRLSTYYEWLPMPERVALESEIIRKCLSRSEFQCSFVEYRGYKVVYRRYASLFFIVGC--EQDSENELGILEFIHALVETLDKYFESVCELDIMFNLEKAHFILDEMVMNGCIVETNKANVLKPIALMEKAS 144

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BLAST of mRNA_H-elongata_contig1067.548.1 vs. uniprot
Match: A0A7S3ZZG7_9STRA (AP complex subunit sigma n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZZG7_9STRA)

HSP 1 Score: 225 bits (573), Expect = 3.100e-73
Identity = 106/144 (73.61%), Postives = 126/144 (87.50%), Query Frame = 0

Query:    2 IKFVLMVNKMGQTRVSTYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVDSDDDNELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDKVA 145
            IKFVLMVNK GQTR+STYY+W+ +PERVALEAE++R C SRSE QCSF E+RGYK++YRRYASLFFIVGV  D D +NELG+LEFIH LVETLDKYF+SVCELDIMFNLEK HFILDEMV++G + E N+ N+LKP+ LM+K +
Sbjct:    3 IKFVLMVNKQGQTRLSTYYEWLSMPERVALEAEIIRTCLSRSEFQCSFVEYRGYKVVYRRYASLFFIVGV--DQDGENELGILEFIHALVETLDKYFESVCELDIMFNLEKAHFILDEMVVDGCVVETNKVNILKPIALMEKAS 144

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BLAST of mRNA_H-elongata_contig1067.548.1 vs. uniprot
Match: A0A7S2FA09_9STRA (AP complex subunit sigma n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FA09_9STRA)

HSP 1 Score: 222 bits (566), Expect = 7.250e-72
Identity = 110/154 (71.43%), Postives = 131/154 (85.06%), Query Frame = 0

Query:    1 MIKFVLMVNKMGQTRVSTYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVDSDDDNELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDKVAHGDSGFGSK 154
            M+KFVLMVNK GQTR+S+YY+W+P+ ER ALEAE++R+C SR+E QCSF E+RGYK+IYRRYASLFFIVG+    D+ NELGVLEFIH LVETLDKYF+SVCELDIMFNLEK HFIL+EMV NG I E N+ N+LKP++LM+K A  DS F SK
Sbjct:   20 MLKFVLMVNKQGQTRLSSYYEWIPMQERCALEAEIIRKCLSRNETQCSFVEYRGYKVIYRRYASLFFIVGM---KDNMNELGVLEFIHALVETLDKYFESVCELDIMFNLEKAHFILEEMVQNGCIFETNKANILKPIMLMEK-ASDDSVFSSK 169

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BLAST of mRNA_H-elongata_contig1067.548.1 vs. uniprot
Match: A0A7S3GXI4_9STRA (AP complex subunit sigma n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GXI4_9STRA)

HSP 1 Score: 221 bits (563), Expect = 1.070e-71
Identity = 102/154 (66.23%), Postives = 130/154 (84.42%), Query Frame = 0

Query:    1 MIKFVLMVNKMGQTRVSTYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVDSDDDNELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDKVAHGDSGFGSK 154
            MIKFVLMVNK GQTR+++Y+ W PI ERVALEAE++RRC SR+E QCSF E+RG+K++YRRYASLFF+V V  D +++NEL +LEFIH LVET+DKYF+SVCELDIMF++EK H+I+DEMV+NG I E N+ N+LKPL LMDK+A  + G  S+
Sbjct:    1 MIKFVLMVNKQGQTRLASYFQWYPIQERVALEAEIIRRCLSRTEFQCSFIEYRGFKVVYRRYASLFFVVAV--DGEEENELAILEFIHSLVETMDKYFESVCELDIMFHIEKAHYIVDEMVVNGSIVENNKVNILKPLALMDKLASAEGGIFSR 152

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BLAST of mRNA_H-elongata_contig1067.548.1 vs. uniprot
Match: A0A2R5GZ26_9STRA (AP complex subunit sigma n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GZ26_9STRA)

HSP 1 Score: 219 bits (559), Expect = 3.340e-71
Identity = 102/145 (70.34%), Postives = 126/145 (86.90%), Query Frame = 0

Query:    1 MIKFVLMVNKMGQTRVSTYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVDSDDDNELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDKVA 145
            MIKFVLMVNK GQTR+S+YY+W+ I ER ALEAE++R+C +R+E QCSF E RGYK++YRRYASLFFIVGV  D D++NELG+LEFIHCLVETLDKYF +VCELDIMFNLEK HFIL+EMV NG++ E N+ NVLKP+ ++D ++
Sbjct:    1 MIKFVLMVNKQGQTRLSSYYEWLTIEERGALEAEIIRKCLARTENQCSFMENRGYKVVYRRYASLFFIVGV--DQDEENELGILEFIHCLVETLDKYFSNVCELDIMFNLEKAHFILNEMVQNGHVVEANKANVLKPITMLDSIS 143

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BLAST of mRNA_H-elongata_contig1067.548.1 vs. uniprot
Match: F0W0A7_9STRA (AP complex subunit sigma n=21 Tax=Oomycota TaxID=4762 RepID=F0W0A7_9STRA)

HSP 1 Score: 216 bits (550), Expect = 7.840e-70
Identity = 105/143 (73.43%), Postives = 125/143 (87.41%), Query Frame = 0

Query:    1 MIKFVLMVNKMGQTRVSTYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVDSDDDNELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDK 143
            MIKFVLMVNK GQTR++ YYD++ I ERVALEAE++R+C SR+E QCSF E+RGYK+IYRRYASLFFIVGV  D D +NELG+LEFIH LVET+DKYF+SVCELDIMFNLEK HFILDEMV+NG I E N+ ++LKP+ LM+K
Sbjct:    1 MIKFVLMVNKQGQTRLAQYYDFLSIQERVALEAEIIRKCLSRNENQCSFVEYRGYKVIYRRYASLFFIVGVQND-DSENELGILEFIHALVETMDKYFESVCELDIMFNLEKAHFILDEMVMNGSIVESNKVSILKPIHLMEK 142

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BLAST of mRNA_H-elongata_contig1067.548.1 vs. uniprot
Match: A0A7S1C3U2_9STRA (AP complex subunit sigma n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C3U2_9STRA)

HSP 1 Score: 215 bits (547), Expect = 2.320e-69
Identity = 101/143 (70.63%), Postives = 124/143 (86.71%), Query Frame = 0

Query:    2 IKFVLMVNKMGQTRVSTYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVDSDDDNELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDKV 144
            IKFVLMVNK GQTR++ Y DW+PI ERVALEAE++R+C SR+ELQCSF E+RGYK++YRRYASL+FIVGV    DD+NEL +LEFIH LVETLDKYF++VCELDIMFNLEK HFIL+EM++NG I E N+ NVL+P+ L++K 
Sbjct:    3 IKFVLMVNKQGQTRLAEYCDWLPIEERVALEAEIIRKCLSRNELQCSFMEYRGYKVVYRRYASLYFIVGV--KGDDENELSILEFIHALVETLDKYFENVCELDIMFNLEKAHFILNEMLMNGCIVETNKANVLRPIHLLEKA 143

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig1067.548.1 vs. uniprot

BLAST of mRNA_H-elongata_contig1067.548.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LPP6_ECTSI	7.220e-103	94.90	AP complex subunit sigma n=1 Tax=Ectocarpus silicu...	[more]
A0A835Z9B6_9STRA	8.080e-93	87.18	AP complex subunit sigma n=1 Tax=Tribonema minus T...	[more]
A0A7S2UUI5_9STRA	2.470e-77	71.43	AP complex subunit sigma n=1 Tax=Fibrocapsa japoni...	[more]
F0Y567_AURAN	5.560e-74	72.92	AP complex subunit sigma n=1 Tax=Aureococcus anoph...	[more]
A0A7S3ZZG7_9STRA	3.100e-73	73.61	AP complex subunit sigma n=1 Tax=Pelagomonas calce...	[more]
A0A7S2FA09_9STRA	7.250e-72	71.43	AP complex subunit sigma n=1 Tax=Florenciella parv...	[more]
A0A7S3GXI4_9STRA	1.070e-71	66.23	AP complex subunit sigma n=1 Tax=Spumella elongata...	[more]
A0A2R5GZ26_9STRA	3.340e-71	70.34	AP complex subunit sigma n=1 Tax=Hondaea fermental...	[more]
F0W0A7_9STRA	7.840e-70	73.43	AP complex subunit sigma n=21 Tax=Oomycota TaxID=4...	[more]
A0A7S1C3U2_9STRA	2.320e-69	70.63	AP complex subunit sigma n=1 Tax=Bicosoecida sp. C...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.450.60		coord: 1..152 e-value: 3.5E-55 score: 187.9
None	No IPR available	PANTHER	PTHR11753:SF4	AP-4 COMPLEX SUBUNIT SIGMA-1	coord: 1..145
IPR016635	Adaptor protein complex, sigma subunit	PIRSF	PIRSF015588	AP_complex_sigma	coord: 1..154 e-value: 8.0E-51 score: 169.8
IPR016635	Adaptor protein complex, sigma subunit	PANTHER	PTHR11753	CLATHRIN COAT ASSEMBLY PROTEIN	coord: 1..145
IPR022775	AP complex, mu/sigma subunit	PFAM	PF01217	Clat_adaptor_s	coord: 1..144 e-value: 8.2E-42 score: 142.5
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 74..86
IPR011012	Longin-like domain superfamily	SUPERFAMILY	64356	SNARE-like	coord: 1..141

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig1067	contig	H-elongata_contig1067:6927..8001 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig1067.548.1	mRNA_H-elongata_contig1067.548.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig1067 6927..8001 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig1067.548.1 ID=prot_H-elongata_contig1067.548.1|Name=mRNA_H-elongata_contig1067.548.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=157bp
MIKFVLMVNKMGQTRVSTYYDWMPIPERVALEAEVVRRCFSRSELQCSFF
EFRGYKIIYRRYASLFFIVGVGVDSDDDNELGVLEFIHCLVETLDKYFQS
VCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDKVAHGDSG
FGSKST*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR016635	AP_complex_ssu
IPR022775	AP_mu_sigma_su
IPR018247	EF_Hand_1_Ca_BS
IPR011012	Longin-like_dom_sf