prot_H-elongata_contig106103.493.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig106103.493.1
Unique Nameprot_H-elongata_contig106103.493.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length60
Homology
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BLAST of mRNA_H-elongata_contig106103.493.1 vs. uniprot
Match: D8LAU6_ECTSI (rRNA-processing protein EFG1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAU6_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 3.610e-15
Identity = 42/55 (76.36%), Postives = 48/55 (87.27%), Query Frame = 0 
Query:    5 KAPSAKNRIRSLTRILNKPGIDEGQRKLLKAQIEALEGRVSEREKNERERTLAIK 59
            K PSAKNRIRSLTR++NKPGI+E QR  L+ Q+E LEG+VSEREK ERERTLAIK
Sbjct:  135 KNPSAKNRIRSLTRLMNKPGIEEEQRLHLQRQVEELEGKVSEREKQERERTLAIK 189
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106103.493.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LAU6_ECTSI3.610e-1576.36rRNA-processing protein EFG1 n=1 Tax=Ectocarpus si... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 30..50

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig106103contigH-elongata_contig106103:1637..2171 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig106103.493.1mRNA_H-elongata_contig106103.493.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig106103 1637..2171 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig106103.493.1 ID=prot_H-elongata_contig106103.493.1|Name=mRNA_H-elongata_contig106103.493.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=60bp
KGGKKAPSAKNRIRSLTRILNKPGIDEGQRKLLKAQIEALEGRVSEREKN
ERERTLAIK*
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