mRNA_H-elongata_contig106103.493.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig106103.493.1
Unique NamemRNA_H-elongata_contig106103.493.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig106103.493.1 vs. uniprot
Match: D8LAU6_ECTSI (rRNA-processing protein EFG1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAU6_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 3.610e-15
Identity = 42/55 (76.36%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:   13 KAPSAKNRIRSLTRILNKPGIDEGQRKLLKAQIEALEGRVSEREKNERERTLAIK 177
            K PSAKNRIRSLTR++NKPGI+E QR  L+ Q+E LEG+VSEREK ERERTLAIK
Sbjct:  135 KNPSAKNRIRSLTRLMNKPGIEEEQRLHLQRQVEELEGKVSEREKQERERTLAIK 189
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106103.493.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LAU6_ECTSI3.610e-1576.36rRNA-processing protein EFG1 n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig106103contigH-elongata_contig106103:1637..2171 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.8
Seed ortholog evalue1.9e-12
Seed eggNOG ortholog2880.D8LAU6
EggNOG free text desc.rRNA processing
EggNOG OGsKOG4484@1,KOG4484@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionrRNA-processing protein EFG1
Ec32 orthologEc-27_006340.1
Exons2
Model size180
Cds size180
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929592.4802306-CDS-H-elongata_contig106103:1636..17051622929592.4802306-CDS-H-elongata_contig106103:1636..1705Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106103 1637..1705 +
1691679082.9053452-CDS-H-elongata_contig106103:1636..17051691679082.9053452-CDS-H-elongata_contig106103:1636..1705Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106103 1637..1705 +
1622929592.4942281-CDS-H-elongata_contig106103:2060..21711622929592.4942281-CDS-H-elongata_contig106103:2060..2171Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106103 2061..2171 +
1691679082.9259212-CDS-H-elongata_contig106103:2060..21711691679082.9259212-CDS-H-elongata_contig106103:2060..2171Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106103 2061..2171 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig106103.493.1prot_H-elongata_contig106103.493.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig106103 1637..2171 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig106103.493.1

>prot_H-elongata_contig106103.493.1 ID=prot_H-elongata_contig106103.493.1|Name=mRNA_H-elongata_contig106103.493.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=60bp
KGGKKAPSAKNRIRSLTRILNKPGIDEGQRKLLKAQIEALEGRVSEREKN
ERERTLAIK*
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mRNA from alignment at H-elongata_contig106103:1637..2171+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig106103.493.1 ID=mRNA_H-elongata_contig106103.493.1|Name=mRNA_H-elongata_contig106103.493.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=535bp|location=Sequence derived from alignment at H-elongata_contig106103:1637..2171+ (Himanthalia elongata Himel1 dioecious)
AAGGGCGGCAAGAAGGCACCGTCCGCGAAGAACAGGATCAGGAGCTTGAC
GAGGATTCTGAACAAGCCGGTGCGCGAGATTACTTCACCTCGTGACATGT
TGATTTGAATTTCGACTTCTAATGGAGTACGGTTTCGATATCACCTCTAT
GTCAAGGGGGCTGTGCAAAACTCGCTCGATGAAGCGTCTGGCGATGGATG
TCTCCATCTATTTTGATCATAGACATCACGAACAATAGTCGTCACACTAC
ATCGCACGTAGTTCCATTGCCCCCCCCTATCTCTTCCCCCACCCACCCCC
ACCACAATTTTCCCTCAATTTGTGTTGCCCCGTCCCATATTCCCCTGGAT
ATCCGTTTCCTTGTGTGGGATCGGTTGATATATGTGACCCCTCTCCCCTA
ACCCCTACGGTGTTTGCAACCCAGGGAATCGACGAGGGCCAACGTAAACT
CCTAAAGGCTCAGATCGAGGCTCTGGAGGGACGGGTCTCCGAAAGGGAGA
AGAATGAGAGGGAGCGGACCCTCGCCATCAAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig106103:1637..2171+

>mRNA_H-elongata_contig106103.493.1 ID=mRNA_H-elongata_contig106103.493.1|Name=mRNA_H-elongata_contig106103.493.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=360bp|location=Sequence derived from alignment at H-elongata_contig106103:1637..2171+ (Himanthalia elongata Himel1 dioecious)
AAGGGCGGCAAGAAGGCACCGTCCGCGAAGAACAGGATCAGGAGCTTGAC
GAGGATTCTGAACAAGCCGAAGGGCGGCAAGAAGGCACCGTCCGCGAAGA
ACAGGATCAGGAGCTTGACGAGGATTCTGAACAAGCCGGGAATCGACGAG
GGCCAACGTAAACTCCTAAAGGCTCAGATCGAGGCTCTGGAGGGACGGGT
CTCCGAAAGGGAGAAGAATGAGAGGGAGCGGACCCTCGCCATCAAGTGAG
GAATCGACGAGGGCCAACGTAAACTCCTAAAGGCTCAGATCGAGGCTCTG
GAGGGACGGGTCTCCGAAAGGGAGAAGAATGAGAGGGAGCGGACCCTCGC
CATCAAGTGA
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