prot_H-elongata_contig105673.468.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig105673.468.1
Unique Nameprot_H-elongata_contig105673.468.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length83
Homology
[Close]
BLAST of mRNA_H-elongata_contig105673.468.1 vs. uniprot
Match: D7FWK1_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWK1_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 3.760e-30
Identity = 62/83 (74.70%), Postives = 72/83 (86.75%), Query Frame = 0 
Query:    1 DRLLELLQKPSAMDDVCMSMTVFPQELLTLIAWPNHLPPYSSSICVTHGPVARNMVAQDVIEVLLSNNNGASGGPVVDKRGEV 83
            + LLE+L++    +DVCM+MTVFPQELLTL+A+P H+ PY SSI VTHGPVARNMV QDVIEVLLSN+ GASGGPVVDKRGEV
Sbjct: 2112 EALLEVLKEED--NDVCMTMTVFPQELLTLVAFPEHIAPYFSSISVTHGPVARNMVGQDVIEVLLSNHPGASGGPVVDKRGEV 2192
[Close]
BLAST of mRNA_H-elongata_contig105673.468.1 vs. uniprot
Match: A0A6H5J7I8_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7I8_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 9.560e-30
Identity = 62/83 (74.70%), Postives = 71/83 (85.54%), Query Frame = 0 
Query:    1 DRLLELLQKPSAMDDVCMSMTVFPQELLTLIAWPNHLPPYSSSICVTHGPVARNMVAQDVIEVLLSNNNGASGGPVVDKRGEV 83
            + LLE+L++    +DVCM+MTVFPQELLTL+A+P H  PY SSI VTHGPVARNMV QDVIEVLLSN+ GASGGPVVDKRGEV
Sbjct: 2137 EALLEVLKEED--NDVCMTMTVFPQELLTLVAFPEHTAPYFSSISVTHGPVARNMVGQDVIEVLLSNHPGASGGPVVDKRGEV 2217
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig105673.468.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FWK1_ECTSI3.760e-3074.70LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5J7I8_9PHAE9.560e-3074.70Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009003Peptidase S1, PA clanSUPERFAMILY50494Trypsin-like serine proteasescoord: 16..83

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig105673contigH-elongata_contig105673:1653..2264 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig105673.468.1mRNA_H-elongata_contig105673.468.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig105673 1653..2264 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig105673.468.1 ID=prot_H-elongata_contig105673.468.1|Name=mRNA_H-elongata_contig105673.468.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
DRLLELLQKPSAMDDVCMSMTVFPQELLTLIAWPNHLPPYSSSICVTHGP
VARNMVAQDVIEVLLSNNNGASGGPVVDKRGEV
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009003Peptidase_S1_PA