prot_H-elongata_contig105447.452.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig105447.452.1
Unique Nameprot_H-elongata_contig105447.452.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length106
Homology
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BLAST of mRNA_H-elongata_contig105447.452.1 vs. uniprot
Match: D7FTN3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTN3_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 3.520e-27
Identity = 55/96 (57.29%), Postives = 66/96 (68.75%), Query Frame = 0 
Query:   10 AASRNDVETVRVLLNMHVDVNAKTPSGVTPLTCAIGGARRADSECARLLRASGGLERLVEDIIAPGSLLDVPIRRPRRAIDIKAECLGRMVYTGQF 105
            AA+      V  L      +  K  SG TPL+CA+GGA   D ECA LLRASGGL RLV+D I+ GS+LDV +RRPRRA+D +A+ LGRMVYTGQF
Sbjct:   27 AAAAGRAWCVEELFAQGCPIEGKHMSGATPLSCAMGGAGGPDGECATLLRASGGLVRLVKDTISSGSILDVSLRRPRRAMDDRADALGRMVYTGQF 122
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BLAST of mRNA_H-elongata_contig105447.452.1 vs. uniprot
Match: A0A7S2WVG6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVG6_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 6.070e-11
Identity = 49/112 (43.75%), Postives = 62/112 (55.36%), Query Frame = 0 
Query:    3 GFTPLHIAASRNDVETVRVLLNM--HVDVNAKTPSGVTPLTCAIGGARRADSECAR-LLRASGGLERLVEDIIAPGSLLDVPIRRPR------RAIDIKAECLGRMVYTGQF 105
            G+TPLHIA SRN    V+VLLNM   +DVNAKT  G TPL  AI       S+ +R LL  +G  +   E      S++D+ I RP+      RA D +AE L R  Y GQ+
Sbjct:  146 GYTPLHIAVSRNHFLCVKVLLNMAMDIDVNAKTHKGFTPLYLAIV----CKSDMSRKLLEEAGAEDDDTETDTGFRSVVDIDITRPQMVPKVNRAADDRAENLERSPYFGQY 253
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BLAST of mRNA_H-elongata_contig105447.452.1 vs. uniprot
Match: A0A6T7CBK2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A6T7CBK2_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 8.000e-9
Identity = 43/111 (38.74%), Postives = 64/111 (57.66%), Query Frame = 0 
Query:    3 GFTPLHIAASRNDVETVRVLLNMHVDV--NAKTPSGVTPLTCAIGGARRADSECARLLRASGGLERLVEDIIAPGSLLDVPIRRP------RRAIDIKAECLGRMVYTGQF 105
            G+ PLH+AAS N  E V+VLL+M +DV  N+ T +G TPL   I  + RA +   ++++ +GG   + ++     S+LD+ IR+P       RA D  A  LGR  Y GQ+
Sbjct:  109 GYRPLHLAASYNYEECVKVLLHMKMDVELNSTTSNGYTPLY--IASSTRAMASY-KMIQEAGGEADMTKNYSGYRSILDINIRQPGAVPRRNRAPDDLARNLGRPSYFGQY 216
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig105447.452.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FTN3_ECTSI3.520e-2757.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2WVG6_9STRA6.070e-1143.75Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6T7CBK2_9STRA8.000e-938.74Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002110Ankyrin repeatSMARTSM00248ANK_2acoord: 2..31
e-value: 1.1E-5
score: 34.9
coord: 35..68
e-value: 2100.0
score: 2.6
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 2..34
score: 13.09
IPR036770Ankyrin repeat-containing domain superfamilyGENE3D1.25.40.20coord: 1..65
e-value: 6.8E-14
score: 54.0
IPR036770Ankyrin repeat-containing domain superfamilySUPERFAMILY48403Ankyrin repeatcoord: 3..61
NoneNo IPR availablePFAMPF13637Ank_4coord: 5..58
e-value: 1.2E-8
score: 35.3
NoneNo IPR availablePANTHERPTHR24189FAMILY NOT NAMEDcoord: 2..62
NoneNo IPR availablePANTHERPTHR24189:SF50coord: 2..62
IPR020683Ankyrin repeat-containing domainPROSITEPS50297ANK_REP_REGIONcoord: 2..44
score: 15.459

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig105447contigH-elongata_contig105447:95..1011 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig105447.452.1mRNA_H-elongata_contig105447.452.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig105447 95..1011 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig105447.452.1 ID=prot_H-elongata_contig105447.452.1|Name=mRNA_H-elongata_contig105447.452.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
GSGFTPLHIAASRNDVETVRVLLNMHVDVNAKTPSGVTPLTCAIGGARRA
DSECARLLRASGGLERLVEDIIAPGSLLDVPIRRPRRAIDIKAECLGRMV
YTGQF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom