prot_H-elongata_contig105208.431.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig105208.431.1
Unique Nameprot_H-elongata_contig105208.431.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length79
Homology
BLAST of mRNA_H-elongata_contig105208.431.1 vs. uniprot
Match: D8LK22_ECTSI (30S ribosomal protein S1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK22_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 5.930e-34
Identity = 61/79 (77.22%), Postives = 71/79 (89.87%), Query Frame = 0
Query:    1 RTLEELQVGEWIEGKVRNVENYGAWVDVNAERDGLLHVRDMSKTFTPNAEQVVATRDSVRVRVKFVDPGAGKLGLSLVE 79
            R LE+LQ GEWI+GKVRNVE+YGAWVDVNAERDGLLHV+DM +TFTP+A +VVAT+D ++ RVKFVDP  GKLGLSLVE
Sbjct:  162 RKLEDLQEGEWIKGKVRNVESYGAWVDVNAERDGLLHVKDMGETFTPSAGEVVATKDIIQARVKFVDPVTGKLGLSLVE 240          
BLAST of mRNA_H-elongata_contig105208.431.1 vs. uniprot
Match: A0A6H5KCP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCP4_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 1.250e-33
Identity = 62/79 (78.48%), Postives = 71/79 (89.87%), Query Frame = 0
Query:    1 RTLEELQVGEWIEGKVRNVENYGAWVDVNAERDGLLHVRDMSKTFTPNAEQVVATRDSVRVRVKFVDPGAGKLGLSLVE 79
            R LE+LQ GEWI GKVRNVE+YGAWVDVNAERDGLLHV+DM +TFTP+A +VVAT+D ++VRVKFVDP  GKLGLSLVE
Sbjct:  307 RKLEDLQEGEWITGKVRNVESYGAWVDVNAERDGLLHVKDMGETFTPSAGEVVATKDIIQVRVKFVDPVTGKLGLSLVE 385          
BLAST of mRNA_H-elongata_contig105208.431.1 vs. uniprot
Match: A0A835YZW7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZW7_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 2.410e-19
Identity = 43/76 (56.58%), Postives = 51/76 (67.11%), Query Frame = 0
Query:    3 LEELQVGEWIEGKVRNVENYGAWVDVNAERDGLLHVRDMSKTFTPNAEQVVATRDSVRVRVKFVDPGAGKLGLSLV 78
            L  L+ G W+ GKVRN+E++GAWVDV AERDGLLHV DMS+ FTP       T D + V VK VD G  +L LS V
Sbjct:  112 LASLERGVWLTGKVRNLESFGAWVDVGAERDGLLHVSDMSEGFTPRVADAFNTGDIISVTVKHVDAGTNRLALSAV 187          
BLAST of mRNA_H-elongata_contig105208.431.1 vs. uniprot
Match: A0A1I4GT85_9LACT (S1 motif domain-containing protein n=35 Tax=Streptococcaceae TaxID=1300 RepID=A0A1I4GT85_9LACT)

HSP 1 Score: 76.3 bits (186), Expect = 2.040e-14
Identity = 37/75 (49.33%), Postives = 52/75 (69.33%), Query Frame = 0
Query:    5 ELQVGEWIEGKVRNVENYGAWVDVNAERDGLLHVRDMSKTFTPNAEQVVATRDSVRVRVKFVDPGAGKLGLSLVE 79
            +L+VG+ +EG VRNV ++GA+VD+  + DGL+HV D+SK F  N  +VVA    V V VK +D   GK+ L+LVE
Sbjct:  632 DLRVGQKLEGAVRNVVDFGAFVDIGIKNDGLIHVSDLSKNFVKNPHEVVAVGQIVTVWVKSIDQERGKINLTLVE 706          
BLAST of mRNA_H-elongata_contig105208.431.1 vs. uniprot
Match: UPI00195F901C (RNA-binding transcriptional accessory protein n=1 Tax=Streptococcus loxodontisalivarius TaxID=1349415 RepID=UPI00195F901C)

HSP 1 Score: 75.1 bits (183), Expect = 5.190e-14
Identity = 37/76 (48.68%), Postives = 53/76 (69.74%), Query Frame = 0
Query:    3 LEELQVGEWIEGKVRNVENYGAWVDVNAERDGLLHVRDMSKTFTPNAEQVVATRDSVRVRVKFVDPGAGKLGLSLV 78
            L++LQ+G+ +EG VRNV ++GA+VD+    DGL+H+ +MSK+F  +  QVV+  D V V V  VD   GK+ LSLV
Sbjct:  629 LKDLQIGQKLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSKSFVNHPSQVVSVGDVVTVWVSKVDLERGKVNLSLV 704          
BLAST of mRNA_H-elongata_contig105208.431.1 vs. uniprot
Match: UPI0011556344 (S1 RNA-binding domain-containing protein n=1 Tax=Bacillus cereus TaxID=1396 RepID=UPI0011556344)

HSP 1 Score: 70.5 bits (171), Expect = 5.270e-14
Identity = 34/74 (45.95%), Postives = 50/74 (67.57%), Query Frame = 0
Query:    5 ELQVGEWIEGKVRNVENYGAWVDVNAERDGLLHVRDMSKTFTPNAEQVVATRDSVRVRVKFVDPGAGKLGLSLV 78
            +LQ+G+ +EG VRNV ++GA++D+  + +GL HV D+SK+F  N   VVA    V V VK +D   GK+ L+LV
Sbjct:   34 DLQIGQQLEGVVRNVVDFGAFIDIGIKNEGLAHVSDLSKSFVKNPSDVVAVGQIVTVWVKSLDLQRGKINLTLV 107          
BLAST of mRNA_H-elongata_contig105208.431.1 vs. uniprot
Match: R1C2D2_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1C2D2_EMIHU)

HSP 1 Score: 74.3 bits (181), Expect = 6.050e-14
Identity = 36/74 (48.65%), Postives = 51/74 (68.92%), Query Frame = 0
Query:    3 LEELQVGEWIEGKVRNVENYGAWVDVNAERDGLLHVRDMSKTFTPNAEQVVATRDSVRVRVKFVDPGAGKLGLS 76
            L++L+VG  +EG VR+V+ YGA+VD+    DGLLHV +M+ TF  +A  + A  D+V VRVK VD   G++ LS
Sbjct:   76 LDQLEVGSTVEGTVRSVQQYGAFVDIGFASDGLLHVSEMADTFVKDANDMFAVGDAVTVRVKSVDLAKGQVALS 149          
BLAST of mRNA_H-elongata_contig105208.431.1 vs. uniprot
Match: A0A7S2V5P7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5P7_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 6.050e-14
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = 0
Query:    1 RTLEELQVGEWIEGKVRNVENYGAWVDVNAERDGLLHVRDM-SKTFTPNAEQVVATRDSVRVRVKFVDPGAGKLGLSLVE 79
            + L ELQ G+ + G VRNVE +GA+V V AE+DGLLH++DM S  +   A++V  + D V V+VKFVD     LGL++ E
Sbjct:  138 KPLSELQAGDRLNGTVRNVEKFGAFVHVGAEKDGLLHIKDMCSAQWVSRADEVFKSGDEVSVQVKFVDAEKRLLGLTMKE 217          
BLAST of mRNA_H-elongata_contig105208.431.1 vs. uniprot
Match: A0A1G6C0D6_9STRE (S1 motif domain-containing protein n=2 Tax=Streptococcus henryi TaxID=439219 RepID=A0A1G6C0D6_9STRE)

HSP 1 Score: 74.3 bits (181), Expect = 9.680e-14
Identity = 35/77 (45.45%), Postives = 52/77 (67.53%), Query Frame = 0
Query:    3 LEELQVGEWIEGKVRNVENYGAWVDVNAERDGLLHVRDMSKTFTPNAEQVVATRDSVRVRVKFVDPGAGKLGLSLVE 79
            + +L++G+ +EG VRNV ++GA+VD+    DGL+H+  MSKTF  +  QVV+  D V V V  +D   GK+ LSLV+
Sbjct:  629 ISDLEIGQKLEGTVRNVVDFGAFVDIGLHDDGLIHISQMSKTFVKHPSQVVSVGDVVTVWVSKIDKERGKINLSLVD 705          
BLAST of mRNA_H-elongata_contig105208.431.1 vs. uniprot
Match: A0A5C5SDL5_9STRE (RNA-binding transcriptional accessory protein n=1 Tax=Streptococcus pharyngis TaxID=1562651 RepID=A0A5C5SDL5_9STRE)

HSP 1 Score: 73.6 bits (179), Expect = 1.810e-13
Identity = 34/77 (44.16%), Postives = 54/77 (70.13%), Query Frame = 0
Query:    3 LEELQVGEWIEGKVRNVENYGAWVDVNAERDGLLHVRDMSKTFTPNAEQVVATRDSVRVRVKFVDPGAGKLGLSLVE 79
            +++LQVG+ +EG VRNV ++GA+VD+    DGL+H+ DM ++F  +  QVV+  + V V +K +D   GK+ LSLV+
Sbjct:  627 IKDLQVGQQLEGTVRNVVDFGAFVDIGIHDDGLVHISDMRRSFVKHPSQVVSVGEIVTVWIKSIDVQRGKINLSLVK 703          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig105208.431.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LK22_ECTSI5.930e-3477.2230S ribosomal protein S1 n=1 Tax=Ectocarpus silicu... [more]
A0A6H5KCP4_9PHAE1.250e-3378.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YZW7_9STRA2.410e-1956.58Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1I4GT85_9LACT2.040e-1449.33S1 motif domain-containing protein n=35 Tax=Strept... [more]
UPI00195F901C5.190e-1448.68RNA-binding transcriptional accessory protein n=1 ... [more]
UPI00115563445.270e-1445.95S1 RNA-binding domain-containing protein n=1 Tax=B... [more]
R1C2D2_EMIHU6.050e-1448.65Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A7S2V5P7_9STRA6.050e-1448.75Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A1G6C0D6_9STRE9.680e-1445.45S1 motif domain-containing protein n=2 Tax=Strepto... [more]
A0A5C5SDL5_9STRE1.810e-1344.16RNA-binding transcriptional accessory protein n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022967RNA-binding domain, S1SMARTSM00316S1_6coord: 7..78
e-value: 2.5E-14
score: 63.6
IPR003029S1 domainPFAMPF00575S1coord: 6..76
e-value: 1.1E-11
score: 44.9
IPR003029S1 domainPROSITEPS50126S1coord: 9..78
score: 15.521
NoneNo IPR availableGENE3D2.40.50.140coord: 1..79
e-value: 2.8E-18
score: 67.5
NoneNo IPR availablePANTHERPTHR10724S1 RNA-BINDING DOMAIN-CONTAINING PROTEIN 1coord: 2..77
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 3..77

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig105208contigH-elongata_contig105208:1453..1955 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig105208.431.1mRNA_H-elongata_contig105208.431.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig105208 1453..1955 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig105208.431.1 ID=prot_H-elongata_contig105208.431.1|Name=mRNA_H-elongata_contig105208.431.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp
RTLEELQVGEWIEGKVRNVENYGAWVDVNAERDGLLHVRDMSKTFTPNAE
QVVATRDSVRVRVKFVDPGAGKLGLSLVE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022967S1_dom
IPR003029S1_domain
IPR012340NA-bd_OB-fold