prot_H-elongata_contig10441.363.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig10441.363.1
Unique Nameprot_H-elongata_contig10441.363.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length121
Homology
BLAST of mRNA_H-elongata_contig10441.363.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 100 bits (248), Expect = 4.540e-22
Identity = 46/107 (42.99%), Postives = 72/107 (67.29%), Query Frame = 0
Query:    9 VYKQVSRPKYKLVFGTKMLYKRKAGQDGKVEKYKCRLVAQGFWQVEGVHYTDRHSPTPATASIRMVLATAAVKDGELRHFDAEQAFLKADIDVELYIEIPEKYWESG 115
            V+++V RP+ + + G+K ++K K G DG+VEKYK RLVAQGF QVEG+ Y +  +P   + SIR++LA AA  D E+   D + AFL  +++ E+Y+++P  +  S 
Sbjct: 1026 VFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASA 1132          
BLAST of mRNA_H-elongata_contig10441.363.1 vs. uniprot
Match: A0A1M2VV58_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VV58_TRAPU)

HSP 1 Score: 99.8 bits (247), Expect = 6.200e-22
Identity = 49/108 (45.37%), Postives = 68/108 (62.96%), Query Frame = 0
Query:    9 VYKQVSRPKYKLVFGTKMLYKRKAGQDGKVEKYKCRLVAQGFWQVEGVHYTDRHSPTPATASIRMVLATAAVKDGELRHFDAEQAFLKADIDVELYIEIPEKYWESGG 116
            +Y +V +P+ + V G K ++K K G DG +EKYK RLVA+GF QVEG+ YTD  +P    ASIR VLA AA+ D ++   D + AFL  D+D E+Y+  P  +    G
Sbjct: 1020 LYDEVEKPRGRKVVGCKWVFKIKRGPDGSIEKYKARLVAKGFTQVEGIDYTDTFAPVSKFASIRTVLALAAMYDLDVDQMDVKSAFLNGDLDEEIYMTCPPGFDHDAG 1127          
BLAST of mRNA_H-elongata_contig10441.363.1 vs. uniprot
Match: A0A060SSE0_PYCCI (Integrase catalytic domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SSE0_PYCCI)

HSP 1 Score: 98.6 bits (244), Expect = 1.570e-21
Identity = 49/114 (42.98%), Postives = 72/114 (63.16%), Query Frame = 0
Query:    1 MCDMAENCVYKQVSRPKYKLVFGTKMLYKRKAGQDGKVEKYKCRLVAQGFWQVEGVHYTDRHSPTPATASIRMVLATAAVKDGELRHFDAEQAFLKADIDVELYIEIPEKYWES 114
            +   A+  +Y +V RP+ + V   K +++ K G DGK++KYK RLVA+GF QVEGV YTD  +P    ASIRM+LA AA  D E+   D + AFL  D++ E+++E P  + + 
Sbjct:  987 LLSFAKAELYDEVERPRNRKVVDCKWVFRIKHGPDGKIQKYKARLVAKGFTQVEGVDYTDTFAPVTKFASIRMLLAFAAKHDLEVHQMDVKSAFLNGDLEEEIFMEAPPGFQQD 1100          
BLAST of mRNA_H-elongata_contig10441.363.1 vs. uniprot
Match: A0A401G4V0_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Sparassis crispa TaxID=139825 RepID=A0A401G4V0_9APHY)

HSP 1 Score: 96.3 bits (238), Expect = 1.020e-20
Identity = 47/114 (41.23%), Postives = 72/114 (63.16%), Query Frame = 0
Query:    9 VYKQVSRPKYKLVFGTKMLYKRKAGQDGKVEKYKCRLVAQGFWQVEGVHYTDRHSPTPATASIRMVLATAAVKDGELRHFDAEQAFLKADIDVELYIEIPEKYWESGGV--KIN 120
            +Y +V RP+ + V   K ++K K G DG++EKYK RLVA+GF QVEG+ + +  +P    AS+R +LA AA  D E+   D + AFL  D+D E+Y+++P  +  S  +  K+N
Sbjct:  957 LYDEVERPRNRKVIDCKWVFKIKRGPDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPPGFHRSNSLVWKLN 1070          
BLAST of mRNA_H-elongata_contig10441.363.1 vs. uniprot
Match: A0A401H317_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H317_9APHY)

HSP 1 Score: 95.5 bits (236), Expect = 1.860e-20
Identity = 47/114 (41.23%), Postives = 72/114 (63.16%), Query Frame = 0
Query:    9 VYKQVSRPKYKLVFGTKMLYKRKAGQDGKVEKYKCRLVAQGFWQVEGVHYTDRHSPTPATASIRMVLATAAVKDGELRHFDAEQAFLKADIDVELYIEIPEKYWESGGV--KIN 120
            +Y +V RP+ + V   K ++K K G DG++EKYK RLVA+GF QVEG+ + +  +P    AS+R +LA AA  D E+   D + AFL  D+D E+Y+++P  +  S  +  K+N
Sbjct:  898 LYDEVERPQNRKVIDCKWVFKIKRGPDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPPGFRRSNSLVWKLN 1011          
BLAST of mRNA_H-elongata_contig10441.363.1 vs. uniprot
Match: A0A401H123_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H123_9APHY)

HSP 1 Score: 95.5 bits (236), Expect = 1.860e-20
Identity = 47/114 (41.23%), Postives = 72/114 (63.16%), Query Frame = 0
Query:    9 VYKQVSRPKYKLVFGTKMLYKRKAGQDGKVEKYKCRLVAQGFWQVEGVHYTDRHSPTPATASIRMVLATAAVKDGELRHFDAEQAFLKADIDVELYIEIPEKYWESGGV--KIN 120
            +Y +V RP+ + V   K ++K K G DG++EKYK RLVA+GF QVEG+ + +  +P    AS+R +LA AA  D E+   D + AFL  D+D E+Y+++P  +  S  +  K+N
Sbjct:  634 LYDKVERPRNRKVIDCKWVFKIKRGLDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPSGFRRSNSLIWKLN 747          
BLAST of mRNA_H-elongata_contig10441.363.1 vs. uniprot
Match: A0A392MQF0_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392MQF0_9FABA)

HSP 1 Score: 92.4 bits (228), Expect = 2.100e-20
Identity = 44/106 (41.51%), Postives = 65/106 (61.32%), Query Frame = 0
Query:    4 MAENCVYKQVSRPKYKLVFGTKMLYKRKAGQDGKVEKYKCRLVAQGFWQVEGVHYTDRHSPTPATASIRMVLATAAVKDGELRHFDAEQAFLKADIDVELYIEIPE 109
            +A+NC +K V  P +    G + +YK K   DG VE+YK RLVA+G+ QVEG+ Y +  SP     ++R +LA AA+K+  L   D   AFL  D+  ++Y++IPE
Sbjct:   32 LAKNCTWKMVELPPHTKPIGCRWVYKIKHKSDGTVERYKARLVAKGYNQVEGIDYFETFSPVAKLITVRTLLAIAAIKNWHLHQLDVNNAFLHGDLQEDVYMKIPE 137          
BLAST of mRNA_H-elongata_contig10441.363.1 vs. uniprot
Match: A0A438GNV2_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GNV2_VITVI)

HSP 1 Score: 94.7 bits (234), Expect = 3.210e-20
Identity = 47/113 (41.59%), Postives = 64/113 (56.64%), Query Frame = 0
Query:    7 NCVYKQVSRPKYKLVFGTKMLYKRKAGQDGKVEKYKCRLVAQGFWQVEGVHYTDRHSPTPATASIRMVLATAAVKDGELRHFDAEQAFLKADIDVELYIEIPEKYWESGGVKI 119
            N  +K V  P  K   G K +YK K   DG +E+YK RLVAQGF Q+EG+ Y +  SP     S+R  LA A  K  EL   D   AFL  D++ E+Y+++PE +  +G  K+
Sbjct:  110 NQTWKVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQETFSPVAKMTSVRCFLAIAVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKV 222          
BLAST of mRNA_H-elongata_contig10441.363.1 vs. uniprot
Match: A0A5K0WT86_9MAGN (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K0WT86_9MAGN)

HSP 1 Score: 94.7 bits (234), Expect = 3.300e-20
Identity = 49/113 (43.36%), Postives = 69/113 (61.06%), Query Frame = 0
Query:    3 DMAENCVYKQVSRPKYKLVFGTKMLYKRKAGQDGKVEKYKCRLVAQGFWQVEGVHYTDRHSPTPATASIRMVLATAAVKDGELRHFDAEQAFLKADIDVELYIEIPEKYWESG 115
             MA+N  +  VS P+     G K +YK K    G +E+YK RLVA+GF Q+EG+ Y + +SP  A  S+R+VLA  A  D EL   D + AFL  D+D E+Y++ P+ + ESG
Sbjct:  155 SMAKNQTWSLVSLPEGVKPVGCKWVYKTKRDSKGNIERYKARLVAKGFTQMEGIDYNEIYSPVSAKESMRIVLALVAHFDLELHQMDVKTAFLNGDLDEEVYMDQPQGFSESG 267          
BLAST of mRNA_H-elongata_contig10441.363.1 vs. uniprot
Match: A0A4Y9XTU1_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Fomitopsis rosea TaxID=34475 RepID=A0A4Y9XTU1_9APHY)

HSP 1 Score: 94.7 bits (234), Expect = 3.500e-20
Identity = 46/100 (46.00%), Postives = 65/100 (65.00%), Query Frame = 0
Query:    9 VYKQVSRPKYKLVFGTKMLYKRKAGQDGKVEKYKCRLVAQGFWQVEGVHYTDRHSPTPATASIRMVLATAAVKDGELRHFDAEQAFLKADIDVELYIEIP 108
            +Y +V RP+ + V G K ++K K G DG++EKYK RLVA+GF QVE V Y +  +PT   ++IR +LA AA  D E+   D + AFL  D+D E+Y+  P
Sbjct:  980 LYDEVERPRNRKVVGCKWVFKIKRGPDGEIEKYKARLVAKGFTQVEDVDYDETFAPTTKFSTIRTLLALAAAHDLEIHQMDVKSAFLNGDLDEEIYMACP 1079          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10441.363.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0C2WN23_AMAMK4.540e-2242.99Integrase catalytic domain-containing protein (Fra... [more]
A0A1M2VV58_TRAPU6.200e-2245.37Retrovirus-related Pol polyprotein from transposon... [more]
A0A060SSE0_PYCCI1.570e-2142.98Integrase catalytic domain-containing protein n=1 ... [more]
A0A401G4V0_9APHY1.020e-2041.23Retrovirus-related Pol polyprotein from transposon... [more]
A0A401H317_9APHY1.860e-2041.23Retrovirus-related Pol polyprotein from transposon... [more]
A0A401H123_9APHY1.860e-2041.23Retrovirus-related Pol polyprotein from transposon... [more]
A0A392MQF0_9FABA2.100e-2041.51Retrovirus-related Pol polyprotein from transposon... [more]
A0A438GNV2_VITVI3.210e-2041.59Retrovirus-related Pol polyprotein from transposon... [more]
A0A5K0WT86_9MAGN3.300e-2043.36Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4Y9XTU1_9APHY3.500e-2046.00Integrase catalytic domain-containing protein n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 9..109
e-value: 3.3E-21
score: 76.1
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 13..111
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 13..111

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10441contigH-elongata_contig10441:2576..2938 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10441.363.1mRNA_H-elongata_contig10441.363.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig10441 2576..2947 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig10441.363.1 ID=prot_H-elongata_contig10441.363.1|Name=mRNA_H-elongata_contig10441.363.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
MCDMAENCVYKQVSRPKYKLVFGTKMLYKRKAGQDGKVEKYKCRLVAQGF
WQVEGVHYTDRHSPTPATASIRMVLATAAVKDGELRHFDAEQAFLKADID
VELYIEIPEKYWESGGVKIN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like