mRNA_H-elongata_contig10441.363.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig10441.363.1 vs. uniprot
Match: A0A1M2VV58_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VV58_TRAPU) HSP 1 Score: 100 bits (249), Expect = 3.730e-22 Identity = 51/117 (43.59%), Postives = 72/117 (61.54%), Query Frame = 1
Query: 7 EMCDMAENCVYKQVSRPKYKLVFGTKMLYKRKAGQDGKVEKYKCRLVAQGFWQVEGVHYTDRHSPTPATASIRMVLATAAVKDGELRHFDAEQAFLKADIDVELYIEIPEKYWESGG 357
E+ A+ +Y +V +P+ + V G K ++K K G DG +EKYK RLVA+GF QVEG+ YTD +P ASIR VLA AA+ D ++ D + AFL D+D E+Y+ P + G
Sbjct: 1011 ELFAFAKAELYDEVEKPRGRKVVGCKWVFKIKRGPDGSIEKYKARLVAKGFTQVEGIDYTDTFAPVSKFASIRTVLALAAMYDLDVDQMDVKSAFLNGDLDEEIYMTCPPGFDHDAG 1127
BLAST of mRNA_H-elongata_contig10441.363.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK) HSP 1 Score: 100 bits (248), Expect = 5.090e-22 Identity = 46/107 (42.99%), Postives = 72/107 (67.29%), Query Frame = 1
Query: 34 VYKQVSRPKYKLVFGTKMLYKRKAGQDGKVEKYKCRLVAQGFWQVEGVHYTDRHSPTPATASIRMVLATAAVKDGELRHFDAEQAFLKADIDVELYIEIPEKYWESG 354
V+++V RP+ + + G+K ++K K G DG+VEKYK RLVAQGF QVEG+ Y + +P + SIR++LA AA D E+ D + AFL +++ E+Y+++P + S
Sbjct: 1026 VFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASA 1132
BLAST of mRNA_H-elongata_contig10441.363.1 vs. uniprot
Match: A0A2R6NNP3_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6NNP3_9APHY) HSP 1 Score: 95.1 bits (235), Expect = 2.140e-20 Identity = 47/118 (39.83%), Postives = 72/118 (61.02%), Query Frame = 1
Query: 7 EMCDMAENCVYKQVSRPKYKLVFGTKMLYKRKAGQDGKVEKYKCRLVAQGFWQVEGVHYTDRHSPTPATASIRMVLATAAVKDGELRHFDAEQAFLKADIDVELYIEIPEKYWESGGV 360
EM + ++ +V PK + V G+K +++ K G +GK+EKYK RLVAQGF QV+G+ YT+ +P SIR +L+ AA D E+ D + AFL D+D E+Y++ P + G+
Sbjct: 16 EMLAFVKANLFDEVECPKNRKVVGSKWVFRIKRGPNGKIEKYKARLVAQGFTQVKGIDYTETFAPVAKFISIRTLLSLAAKLDLEIHQMDVKSAFLNGDLDEEIYMKCPPGHHAKEGI 133
BLAST of mRNA_H-elongata_contig10441.363.1 vs. uniprot
Match: A0A438GNV2_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GNV2_VITVI) HSP 1 Score: 94.7 bits (234), Expect = 3.580e-20 Identity = 47/113 (41.59%), Postives = 64/113 (56.64%), Query Frame = 1
Query: 28 NCVYKQVSRPKYKLVFGTKMLYKRKAGQDGKVEKYKCRLVAQGFWQVEGVHYTDRHSPTPATASIRMVLATAAVKDGELRHFDAEQAFLKADIDVELYIEIPEKYWESGGVKI 366
N +K V P K G K +YK K DG +E+YK RLVAQGF Q+EG+ Y + SP S+R LA A K EL D AFL D++ E+Y+++PE + +G K+
Sbjct: 110 NQTWKVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQETFSPVAKMTSVRCFLAIAVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKV 222
BLAST of mRNA_H-elongata_contig10441.363.1 vs. uniprot
Match: A0A1C7MSU6_GRIFR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Grifola frondosa TaxID=5627 RepID=A0A1C7MSU6_GRIFR) HSP 1 Score: 94.4 bits (233), Expect = 5.140e-20 Identity = 46/100 (46.00%), Postives = 66/100 (66.00%), Query Frame = 1
Query: 34 VYKQVSRPKYKLVFGTKMLYKRKAGQDGKVEKYKCRLVAQGFWQVEGVHYTDRHSPTPATASIRMVLATAAVKDGELRHFDAEQAFLKADIDVELYIEIP 333
+Y +V RP+ + V G K +++ K G DG++EKYK R+VA+GF QVEGV YTD +P ASIR +LA AA D E+ D + AFL ++D E+++ P
Sbjct: 313 LYDEVERPRDRKVVGCKWVFRIKRGPDGEIEKYKARVVAKGFTQVEGVDYTDTFAPVTKFASIRALLALAAKLDLEIHQMDVKSAFLNGNLDEEIFMACP 412
BLAST of mRNA_H-elongata_contig10441.363.1 vs. uniprot
Match: A0A060SUY4_PYCCI (Uncharacterized protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SUY4_PYCCI) HSP 1 Score: 94.4 bits (233), Expect = 5.300e-20 Identity = 48/110 (43.64%), Postives = 69/110 (62.73%), Query Frame = 1
Query: 7 EMCDMAENCVYKQVSRPKYKLVFGTKMLYKRKAGQDGKVEKYKCRLVAQGFWQVEGVHYTDRHSPTPATASIRMVLATAAVKDGELRHFDAEQAFLKADIDVELYIEIPE 336
E+ A+ Y +V RP+ + V G K +++ K G DG VE+YK RLVAQGF QVEG+ Y++ +P ASIR VL AA+ D E+ D + AFL D+D E+++ P+
Sbjct: 952 ELLAFAKAEPYDEVERPQNRKVVGCKWVFRLKRGADGSVERYKARLVAQGFTQVEGIDYSEMFAPVSKFASIRTVLTLAALFDLEIDQMDVKSAFLNGDLDEEIFMAPPQ 1061
BLAST of mRNA_H-elongata_contig10441.363.1 vs. uniprot
Match: A0A438E4T4_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=6 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E4T4_VITVI) HSP 1 Score: 93.6 bits (231), Expect = 9.790e-20 Identity = 46/113 (40.71%), Postives = 63/113 (55.75%), Query Frame = 1
Query: 28 NCVYKQVSRPKYKLVFGTKMLYKRKAGQDGKVEKYKCRLVAQGFWQVEGVHYTDRHSPTPATASIRMVLATAAVKDGELRHFDAEQAFLKADIDVELYIEIPEKYWESGGVKI 366
N +K V P K G K +YK K DG +E+YK RLVAQGF Q+EG+ Y + SP S+R LA K EL D AFL D++ E+Y+++PE + +G K+
Sbjct: 579 NQTWKVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQEMFSPVAKMTSVRWFLAVVVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKV 691
BLAST of mRNA_H-elongata_contig10441.363.1 vs. uniprot
Match: A5BCC7_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BCC7_VITVI) HSP 1 Score: 93.2 bits (230), Expect = 1.350e-19 Identity = 46/113 (40.71%), Postives = 63/113 (55.75%), Query Frame = 1
Query: 28 NCVYKQVSRPKYKLVFGTKMLYKRKAGQDGKVEKYKCRLVAQGFWQVEGVHYTDRHSPTPATASIRMVLATAAVKDGELRHFDAEQAFLKADIDVELYIEIPEKYWESGGVKI 366
N +K V P K G K +YK K DG +E+YK RLVAQGF Q+EG+ Y + SP S+R LA K EL D AFL D++ E+Y+++PE + +G K+
Sbjct: 833 NQTWKVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQEXFSPVAKMTSVRCFLAVXVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKV 945
BLAST of mRNA_H-elongata_contig10441.363.1 vs. uniprot
Match: A0A2K3JS97_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3JS97_TRIPR) HSP 1 Score: 89.4 bits (220), Expect = 1.600e-19 Identity = 45/113 (39.82%), Postives = 67/113 (59.29%), Query Frame = 1
Query: 4 TEMCDMAENCVYKQVSRPKYKLVFGTKMLYKRKAGQDGKVEKYKCRLVAQGFWQVEGVHYTDRHSPTPATASIRMVLATAAVKDGELRHFDAEQAFLKADIDVELYIEIPEKY 342
TE+ +A+N + VS P K+ G K +YK K +G +E+YK RLVAQG+ Q+EGV Y D SP ++R++L+ AA+K L D AFL D+ ++Y+ +P Y
Sbjct: 82 TELHALAKNNTWSVVSLPPGKVPIGCKWVYKVKYHANGSIERYKARLVAQGYTQMEGVDYFDTFSPVAKLTTVRVLLSLAAIKGWHLEQLDVNNAFLHGDLHEDVYMVLPPGY 194
BLAST of mRNA_H-elongata_contig10441.363.1 vs. uniprot
Match: A0A5E3XLV3_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Peniophora sp. CBMAI 1063 TaxID=718367 RepID=A0A5E3XLV3_9AGAM) HSP 1 Score: 86.7 bits (213), Expect = 1.420e-18 Identity = 48/117 (41.03%), Postives = 66/117 (56.41%), Query Frame = 1
Query: 7 EMCDMAENCVYKQVSRPKYKLVFGTKMLYKRKAGQDGKVEKYKCRLVAQGFWQVEGVHYTDRHSPTPATASIRMVLATAAVKDGELRHFDAEQAFLKADIDVELYIEIPEKYWESGG 357
E+ N + V P K+ G++ ++K K DG +++YK RLVAQGF Q G Y + + TP +IR VLA AA +D LR D AFL +ID E+Y+ PE + ESGG
Sbjct: 17 ELLAHLRNGTWTVVELPPGKVAIGSRWVFKLKRNPDGTIDRYKARLVAQGFSQRPGFDYFEVFAGTPRFEAIRAVLALAACEDHHLRFIDVSNAFLNGEIDAEVYMRQPEGF-ESGG 132 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10441.363.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10441.363.1 >prot_H-elongata_contig10441.363.1 ID=prot_H-elongata_contig10441.363.1|Name=mRNA_H-elongata_contig10441.363.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp MCDMAENCVYKQVSRPKYKLVFGTKMLYKRKAGQDGKVEKYKCRLVAQGFback to top mRNA from alignment at H-elongata_contig10441:2576..2947- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig10441.363.1 ID=mRNA_H-elongata_contig10441.363.1|Name=mRNA_H-elongata_contig10441.363.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=372bp|location=Sequence derived from alignment at H-elongata_contig10441:2576..2947- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig10441:2576..2947- >mRNA_H-elongata_contig10441.363.1 ID=mRNA_H-elongata_contig10441.363.1|Name=mRNA_H-elongata_contig10441.363.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at H-elongata_contig10441:2576..2947- (Himanthalia elongata Himel1 dioecious)back to top |