mRNA_H-elongata_contig10441.363.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10441.363.1
Unique NamemRNA_H-elongata_contig10441.363.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig10441.363.1 vs. uniprot
Match: A0A1M2VV58_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VV58_TRAPU)

HSP 1 Score: 100 bits (249), Expect = 3.730e-22
Identity = 51/117 (43.59%), Postives = 72/117 (61.54%), Query Frame = 1
Query:    7 EMCDMAENCVYKQVSRPKYKLVFGTKMLYKRKAGQDGKVEKYKCRLVAQGFWQVEGVHYTDRHSPTPATASIRMVLATAAVKDGELRHFDAEQAFLKADIDVELYIEIPEKYWESGG 357
            E+   A+  +Y +V +P+ + V G K ++K K G DG +EKYK RLVA+GF QVEG+ YTD  +P    ASIR VLA AA+ D ++   D + AFL  D+D E+Y+  P  +    G
Sbjct: 1011 ELFAFAKAELYDEVEKPRGRKVVGCKWVFKIKRGPDGSIEKYKARLVAKGFTQVEGIDYTDTFAPVSKFASIRTVLALAAMYDLDVDQMDVKSAFLNGDLDEEIYMTCPPGFDHDAG 1127          
BLAST of mRNA_H-elongata_contig10441.363.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 100 bits (248), Expect = 5.090e-22
Identity = 46/107 (42.99%), Postives = 72/107 (67.29%), Query Frame = 1
Query:   34 VYKQVSRPKYKLVFGTKMLYKRKAGQDGKVEKYKCRLVAQGFWQVEGVHYTDRHSPTPATASIRMVLATAAVKDGELRHFDAEQAFLKADIDVELYIEIPEKYWESG 354
            V+++V RP+ + + G+K ++K K G DG+VEKYK RLVAQGF QVEG+ Y +  +P   + SIR++LA AA  D E+   D + AFL  +++ E+Y+++P  +  S 
Sbjct: 1026 VFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASA 1132          
BLAST of mRNA_H-elongata_contig10441.363.1 vs. uniprot
Match: A0A2R6NNP3_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6NNP3_9APHY)

HSP 1 Score: 95.1 bits (235), Expect = 2.140e-20
Identity = 47/118 (39.83%), Postives = 72/118 (61.02%), Query Frame = 1
Query:    7 EMCDMAENCVYKQVSRPKYKLVFGTKMLYKRKAGQDGKVEKYKCRLVAQGFWQVEGVHYTDRHSPTPATASIRMVLATAAVKDGELRHFDAEQAFLKADIDVELYIEIPEKYWESGGV 360
            EM    +  ++ +V  PK + V G+K +++ K G +GK+EKYK RLVAQGF QV+G+ YT+  +P     SIR +L+ AA  D E+   D + AFL  D+D E+Y++ P  +    G+
Sbjct:   16 EMLAFVKANLFDEVECPKNRKVVGSKWVFRIKRGPNGKIEKYKARLVAQGFTQVKGIDYTETFAPVAKFISIRTLLSLAAKLDLEIHQMDVKSAFLNGDLDEEIYMKCPPGHHAKEGI 133          
BLAST of mRNA_H-elongata_contig10441.363.1 vs. uniprot
Match: A0A438GNV2_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GNV2_VITVI)

HSP 1 Score: 94.7 bits (234), Expect = 3.580e-20
Identity = 47/113 (41.59%), Postives = 64/113 (56.64%), Query Frame = 1
Query:   28 NCVYKQVSRPKYKLVFGTKMLYKRKAGQDGKVEKYKCRLVAQGFWQVEGVHYTDRHSPTPATASIRMVLATAAVKDGELRHFDAEQAFLKADIDVELYIEIPEKYWESGGVKI 366
            N  +K V  P  K   G K +YK K   DG +E+YK RLVAQGF Q+EG+ Y +  SP     S+R  LA A  K  EL   D   AFL  D++ E+Y+++PE +  +G  K+
Sbjct:  110 NQTWKVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQETFSPVAKMTSVRCFLAIAVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKV 222          
BLAST of mRNA_H-elongata_contig10441.363.1 vs. uniprot
Match: A0A1C7MSU6_GRIFR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Grifola frondosa TaxID=5627 RepID=A0A1C7MSU6_GRIFR)

HSP 1 Score: 94.4 bits (233), Expect = 5.140e-20
Identity = 46/100 (46.00%), Postives = 66/100 (66.00%), Query Frame = 1
Query:   34 VYKQVSRPKYKLVFGTKMLYKRKAGQDGKVEKYKCRLVAQGFWQVEGVHYTDRHSPTPATASIRMVLATAAVKDGELRHFDAEQAFLKADIDVELYIEIP 333
            +Y +V RP+ + V G K +++ K G DG++EKYK R+VA+GF QVEGV YTD  +P    ASIR +LA AA  D E+   D + AFL  ++D E+++  P
Sbjct:  313 LYDEVERPRDRKVVGCKWVFRIKRGPDGEIEKYKARVVAKGFTQVEGVDYTDTFAPVTKFASIRALLALAAKLDLEIHQMDVKSAFLNGNLDEEIFMACP 412          
BLAST of mRNA_H-elongata_contig10441.363.1 vs. uniprot
Match: A0A060SUY4_PYCCI (Uncharacterized protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SUY4_PYCCI)

HSP 1 Score: 94.4 bits (233), Expect = 5.300e-20
Identity = 48/110 (43.64%), Postives = 69/110 (62.73%), Query Frame = 1
Query:    7 EMCDMAENCVYKQVSRPKYKLVFGTKMLYKRKAGQDGKVEKYKCRLVAQGFWQVEGVHYTDRHSPTPATASIRMVLATAAVKDGELRHFDAEQAFLKADIDVELYIEIPE 336
            E+   A+   Y +V RP+ + V G K +++ K G DG VE+YK RLVAQGF QVEG+ Y++  +P    ASIR VL  AA+ D E+   D + AFL  D+D E+++  P+
Sbjct:  952 ELLAFAKAEPYDEVERPQNRKVVGCKWVFRLKRGADGSVERYKARLVAQGFTQVEGIDYSEMFAPVSKFASIRTVLTLAALFDLEIDQMDVKSAFLNGDLDEEIFMAPPQ 1061          
BLAST of mRNA_H-elongata_contig10441.363.1 vs. uniprot
Match: A0A438E4T4_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=6 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E4T4_VITVI)

HSP 1 Score: 93.6 bits (231), Expect = 9.790e-20
Identity = 46/113 (40.71%), Postives = 63/113 (55.75%), Query Frame = 1
Query:   28 NCVYKQVSRPKYKLVFGTKMLYKRKAGQDGKVEKYKCRLVAQGFWQVEGVHYTDRHSPTPATASIRMVLATAAVKDGELRHFDAEQAFLKADIDVELYIEIPEKYWESGGVKI 366
            N  +K V  P  K   G K +YK K   DG +E+YK RLVAQGF Q+EG+ Y +  SP     S+R  LA    K  EL   D   AFL  D++ E+Y+++PE +  +G  K+
Sbjct:  579 NQTWKVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQEMFSPVAKMTSVRWFLAVVVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKV 691          
BLAST of mRNA_H-elongata_contig10441.363.1 vs. uniprot
Match: A5BCC7_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BCC7_VITVI)

HSP 1 Score: 93.2 bits (230), Expect = 1.350e-19
Identity = 46/113 (40.71%), Postives = 63/113 (55.75%), Query Frame = 1
Query:   28 NCVYKQVSRPKYKLVFGTKMLYKRKAGQDGKVEKYKCRLVAQGFWQVEGVHYTDRHSPTPATASIRMVLATAAVKDGELRHFDAEQAFLKADIDVELYIEIPEKYWESGGVKI 366
            N  +K V  P  K   G K +YK K   DG +E+YK RLVAQGF Q+EG+ Y +  SP     S+R  LA    K  EL   D   AFL  D++ E+Y+++PE +  +G  K+
Sbjct:  833 NQTWKVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQEXFSPVAKMTSVRCFLAVXVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKV 945          
BLAST of mRNA_H-elongata_contig10441.363.1 vs. uniprot
Match: A0A2K3JS97_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3JS97_TRIPR)

HSP 1 Score: 89.4 bits (220), Expect = 1.600e-19
Identity = 45/113 (39.82%), Postives = 67/113 (59.29%), Query Frame = 1
Query:    4 TEMCDMAENCVYKQVSRPKYKLVFGTKMLYKRKAGQDGKVEKYKCRLVAQGFWQVEGVHYTDRHSPTPATASIRMVLATAAVKDGELRHFDAEQAFLKADIDVELYIEIPEKY 342
            TE+  +A+N  +  VS P  K+  G K +YK K   +G +E+YK RLVAQG+ Q+EGV Y D  SP     ++R++L+ AA+K   L   D   AFL  D+  ++Y+ +P  Y
Sbjct:   82 TELHALAKNNTWSVVSLPPGKVPIGCKWVYKVKYHANGSIERYKARLVAQGYTQMEGVDYFDTFSPVAKLTTVRVLLSLAAIKGWHLEQLDVNNAFLHGDLHEDVYMVLPPGY 194          
BLAST of mRNA_H-elongata_contig10441.363.1 vs. uniprot
Match: A0A5E3XLV3_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Peniophora sp. CBMAI 1063 TaxID=718367 RepID=A0A5E3XLV3_9AGAM)

HSP 1 Score: 86.7 bits (213), Expect = 1.420e-18
Identity = 48/117 (41.03%), Postives = 66/117 (56.41%), Query Frame = 1
Query:    7 EMCDMAENCVYKQVSRPKYKLVFGTKMLYKRKAGQDGKVEKYKCRLVAQGFWQVEGVHYTDRHSPTPATASIRMVLATAAVKDGELRHFDAEQAFLKADIDVELYIEIPEKYWESGG 357
            E+     N  +  V  P  K+  G++ ++K K   DG +++YK RLVAQGF Q  G  Y +  + TP   +IR VLA AA +D  LR  D   AFL  +ID E+Y+  PE + ESGG
Sbjct:   17 ELLAHLRNGTWTVVELPPGKVAIGSRWVFKLKRNPDGTIDRYKARLVAQGFSQRPGFDYFEVFAGTPRFEAIRAVLALAACEDHHLRFIDVSNAFLNGEIDAEVYMRQPEGF-ESGG 132          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10441.363.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1M2VV58_TRAPU3.730e-2243.59Retrovirus-related Pol polyprotein from transposon... [more]
A0A0C2WN23_AMAMK5.090e-2242.99Integrase catalytic domain-containing protein (Fra... [more]
A0A2R6NNP3_9APHY2.140e-2039.83Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438GNV2_VITVI3.580e-2041.59Retrovirus-related Pol polyprotein from transposon... [more]
A0A1C7MSU6_GRIFR5.140e-2046.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A060SUY4_PYCCI5.300e-2043.64Uncharacterized protein n=1 Tax=Pycnoporus cinnaba... [more]
A0A438E4T4_VITVI9.790e-2040.71Retrovirus-related Pol polyprotein from transposon... [more]
A5BCC7_VITVI1.350e-1940.71Uncharacterized protein n=1 Tax=Vitis vinifera Tax... [more]
A0A2K3JS97_TRIPR1.600e-1939.82Retrovirus-related Pol polyprotein from transposon... [more]
A0A5E3XLV3_9AGAM1.420e-1841.03Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10441contigH-elongata_contig10441:2576..2947 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score91.7
Seed ortholog evalue2.6e-16
Seed eggNOG ortholog28532.XP_010532348.1
Preferred nameUSP
KEGG rclassRC00002
KEGG koko:K12447
KEGG ReactionR00289,R00502,R01381,R03077,R08845
KEGG Pathwayko00040,ko00052,ko00053,ko00520,ko01100,ko01130,map00040,map00052,map00053,map00520,map01100,map01130
KEGG ModuleM00014
GOsGO:0003674,GO:0003824,GO:0003983,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006011,GO:0006082,GO:0006139,GO:0006725,GO:0006793,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009225,GO:0009226,GO:0009555,GO:0009987,GO:0010035,GO:0010038,GO:0010491,GO:0016740,GO:0016772,GO:0016779,GO:0017103,GO:0018130,GO:0019438,GO:0019752,GO:0032501,GO:0032502,GO:0033356,GO:0034641,GO:0034654,GO:0042221,GO:0042995,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046398,GO:0046483,GO:0046686,GO:0047338,GO:0047350,GO:0048229,GO:0048856,GO:0050896,GO:0051748,GO:0052573,GO:0055086,GO:0070569,GO:0071704,GO:0090406,GO:0120025,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901576
EggNOG free text desc.udp-sugar
EggNOG OGs37MVU@33090,3GGIU@35493,3HSQP@3699,COG2801@1,COG4284@1,KOG0017@2759,KOG2388@2759
EC2.7.7.64
COG Functional cat.M
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size372
Cds size363
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929577.014608-CDS-H-elongata_contig10441:2575..29381622929577.014608-CDS-H-elongata_contig10441:2575..2938Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10441 2576..2938 -
1691679077.4732084-CDS-H-elongata_contig10441:2575..29381691679077.4732084-CDS-H-elongata_contig10441:2575..2938Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10441 2576..2938 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929577.0310102-UTR-H-elongata_contig10441:2938..29471622929577.0310102-UTR-H-elongata_contig10441:2938..2947Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10441 2939..2947 -
1691679077.4859347-UTR-H-elongata_contig10441:2938..29471691679077.4859347-UTR-H-elongata_contig10441:2938..2947Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10441 2939..2947 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10441.363.1prot_H-elongata_contig10441.363.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10441 2576..2938 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10441.363.1

>prot_H-elongata_contig10441.363.1 ID=prot_H-elongata_contig10441.363.1|Name=mRNA_H-elongata_contig10441.363.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
MCDMAENCVYKQVSRPKYKLVFGTKMLYKRKAGQDGKVEKYKCRLVAQGF
WQVEGVHYTDRHSPTPATASIRMVLATAAVKDGELRHFDAEQAFLKADID
VELYIEIPEKYWESGGVKIN*
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mRNA from alignment at H-elongata_contig10441:2576..2947-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10441.363.1 ID=mRNA_H-elongata_contig10441.363.1|Name=mRNA_H-elongata_contig10441.363.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=372bp|location=Sequence derived from alignment at H-elongata_contig10441:2576..2947- (Himanthalia elongata Himel1 dioecious)
GAAACAGAGATGTGTGATATGGCCGAGAACTGCGTTTATAAGCAGGTGTC TCGCCCGAAGTATAAGCTCGTGTTTGGGACAAAAATGCTCTATAAACGAA AGGCCGGACAGGACGGCAAGGTAGAGAAGTACAAGTGCCGACTTGTCGCT CAAGGTTTCTGGCAGGTGGAAGGTGTGCACTACACAGATAGGCACTCGCC CACGCCAGCTACCGCGTCAATCCGAATGGTGTTGGCGACGGCAGCGGTCA AGGATGGAGAGCTGCGCCATTTCGACGCGGAGCAGGCATTCTTGAAGGCG GACATCGATGTAGAATTATACATTGAGATCCCTGAGAAGTACTGGGAAAG TGGGGGTGTTAAAATAAATTAA
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Coding sequence (CDS) from alignment at H-elongata_contig10441:2576..2947-

>mRNA_H-elongata_contig10441.363.1 ID=mRNA_H-elongata_contig10441.363.1|Name=mRNA_H-elongata_contig10441.363.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at H-elongata_contig10441:2576..2947- (Himanthalia elongata Himel1 dioecious)
ATGTGTGATATGGCCGAGAACTGCGTTTATAAGCAGGTGTCTCGCCCGAA
GTATAAGCTCGTGTTTGGGACAAAAATGCTCTATAAACGAAAGGCCGGAC
AGGACGGCAAGGTAGAGAAGTACAAGTGCCGACTTGTCGCTCAAGGTTTC
TGGCAGGTGGAAGGTGTGCACTACACAGATAGGCACTCGCCCACGCCAGC
TACCGCGTCAATCCGAATGGTGTTGGCGACGGCAGCGGTCAAGGATGGAG
AGCTGCGCCATTTCGACGCGGAGCAGGCATTCTTGAAGGCGGACATCGAT
GTAGAATTATACATTGAGATCCCTGAGAAGTACTGGGAAAGTGGGGGTGT
TAAAATAAATTAAATGTGTGATATGGCCGAGAACTGCGTTTATAAGCAGG
TGTCTCGCCCGAAGTATAAGCTCGTGTTTGGGACAAAAATGCTCTATAAA
CGAAAGGCCGGACAGGACGGCAAGGTAGAGAAGTACAAGTGCCGACTTGT
CGCTCAAGGTTTCTGGCAGGTGGAAGGTGTGCACTACACAGATAGGCACT
CGCCCACGCCAGCTACCGCGTCAATCCGAATGGTGTTGGCGACGGCAGCG
GTCAAGGATGGAGAGCTGCGCCATTTCGACGCGGAGCAGGCATTCTTGAA
GGCGGACATCGATGTAGAATTATACATTGAGATCCCTGAGAAGTACTGGG
AAAGTGGGGGTGTTAAAATAAATTAA
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