Homology
BLAST of mRNA_H-elongata_contig102973.252.1 vs. uniprot
Match:
D7G732_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G732_ECTSI)
HSP 1 Score: 110 bits (275), Expect = 1.550e-26
Identity = 48/73 (65.75%), Postives = 61/73 (83.56%), Query Frame = 1
Query: 1 PGARSYHAAASLVSDGQDSVSCVYVFGGRDYENSILFSDLWRLCPVSGFLGSAENTTFRWTELSPSGDLPLGR 219
P +RSYHA ASL S+G +C+Y++GGR+YE SIL+SDLW LCPVS +LG++E+TTF WTELSP+G LPLGR
Sbjct: 280 PASRSYHAVASLASNGLGGSACLYMYGGRNYEMSILYSDLWSLCPVSNYLGNSEDTTFTWTELSPAGTLPLGR 352
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102973.252.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 1.55e-26 / Id = 65.75 Sequence D7G732_ECTSI
Match Name E-value Identity Description
D7G732_ECTSI 1.550e-26 65.75 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 113.6 Seed ortholog evalue 3.9e-23 Seed eggNOG ortholog 2880.D7G732 EggNOG free text desc. calcium ion binding EggNOG OGs KOG1217@1,KOG1217@2759 Ec32 ortholog description Kelch-type beta propeller Ec32 ortholog Ec-01_011220.1 COG Functional cat. O Best tax level Eukaryota Best eggNOG OG NA|NA|NA Hectar predicted targeting category other localisation Exons 1 Model size 222 Cds size 222 Stop 1 Start 0
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622929565.9679751-CDS-H-elongata_contig102973:1315..1537 1622929565.9679751-CDS-H-elongata_contig102973:1315..1537 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig102973 1316..1537 - 1691679072.981168-CDS-H-elongata_contig102973:1315..1537 1691679072.981168-CDS-H-elongata_contig102973:1315..1537 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig102973 1316..1537 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig102973.252.1
>prot_H-elongata_contig102973.252.1 ID=prot_H-elongata_contig102973.252.1|Name=mRNA_H-elongata_contig102973.252.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
PGARSYHAAASLVSDGQDSVSCVYVFGGRDYENSILFSDLWRLCPVSGFL back to top mRNA from alignment at H-elongata_contig102973:1316..1537-
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig102973.252.1 ID=mRNA_H-elongata_contig102973.252.1|Name=mRNA_H-elongata_contig102973.252.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=222bp|location=Sequence derived from alignment at H-elongata_contig102973:1316..1537- (Himanthalia elongata Himel1 dioecious)CCGGGTGCTCGTTCGTACCACGCGGCTGCCTCGCTCGTTTCGGATGGTCA
AGACAGCGTTTCATGCGTGTACGTCTTCGGGGGAAGGGATTACGAGAACA
GCATCCTCTTCTCGGACCTATGGAGACTGTGCCCGGTGTCCGGCTTTCTC
GGGAGCGCTGAGAATACCACCTTTCGATGGACTGAGTTATCGCCATCGGG
GGATTTGCCTTTGGGGAGGTGA back to top Coding sequence (CDS) from alignment at H-elongata_contig102973:1316..1537-
>mRNA_H-elongata_contig102973.252.1 ID=mRNA_H-elongata_contig102973.252.1|Name=mRNA_H-elongata_contig102973.252.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig102973:1316..1537- (Himanthalia elongata Himel1 dioecious) back to top