prot_H-elongata_contig10266.229.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig10266.229.1
Unique Nameprot_H-elongata_contig10266.229.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length477
Homology
BLAST of mRNA_H-elongata_contig10266.229.1 vs. uniprot
Match: A0A835YXX5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXX5_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.040e-16
Identity = 83/300 (27.67%), Postives = 123/300 (41.00%), Query Frame = 0
Query:  144 HLPNSK-ADSIAAFLRELASRWEMEPDSCEILVALPSKRHVWMMYIQSPTCIHLGHEDCSYAYFVQMWSLQCPHVKLKSSMGSAKCNTCTLANAELDHLRIHGGPEWRTSEAGLIERLLRDHEQDIADSRGFYMDQRQKAIATPHKL-----------------------LCIAIDGSGQSSYACPTFPQETKDSSRDWKLRFKLIGTLVAGRSCHFFTLANNWETGANLTIQVLHSTLVSLFKKSLETGEPLPRELHLQCDNYSRENKSRIVCAYLTMLIRWGLFDKVELHFGLDGHTH 419
            H P +K A S+ A+LR      E +PDS +  V  P KR VW  ++                          P +K++ +M    C+ C      LD  R     +  TS A   +    +H +D    R  YM   + A A  ++L                       L I +D +   +   P F ++ K       +R  L+G  + G     FT+  +   G NLT   L+  L    +K+   G P P++L LQ DN +++NK+  V AY  +L+  GLF  VELHF L GHTH
Sbjct:   11 HAPKAKVAISVHAWLRIYWVTCESQPDSDQ--VHSPLKRKVWAEWL--------------------------PQLKVRKTMRFTTCSMCVDYRERLDQTR-----DPATSAAS--KTCYYNHIKDADAQRRHYMLAAELAEAQHNQLDRLLAAAEDAGEYTSTVTFVPDILTICMDAAAMEN-GLPQFHEKNKAVETGHAVRLTLLGAKMHGVKYSVFTVLKHLPGGGNLTSTALNEMLQQYREKN--PGRPFPKQLRLQLDNTNKDNKNHTVMAYCALLVLAGLFQTVELHFLLVGHTH 272          
BLAST of mRNA_H-elongata_contig10266.229.1 vs. uniprot
Match: A0A388KH90_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KH90_CHABU)

HSP 1 Score: 76.3 bits (186), Expect = 5.940e-11
Identity = 65/223 (29.15%), Postives = 104/223 (46.64%), Query Frame = 0
Query:  204 AYFVQMWSLQCPHVKLKSSMGSAKCNTCTLANAELDHLRIHGG-PEWRTSEAGLIERLLRDHEQDIADSRGFYMDQRQKAIATPHKLLCIAIDGSGQSSYACPTFPQE--TKDSSRDWKLRFKLIGTLVAGRSCHFFTLANNW----ETGANLTIQVLHSTLVSLFKKSLETGEPLPRELHLQCDNYSRENKSRIVCAYLTMLIRWGLFDKVELHFGLDGHTH 419
            A F +MW     HV+L      A+CN C + N+ L    I G  PE R +    +    + H    +  R  Y     ++   P + LCI IDG  Q+    P   +   +K+ S D  ++  L G +  G++   F   + W      G+N    V++S    L       GE LP +L +Q DN   +NK++ V A++ ML+++ +F+ VE+ F + GHTH
Sbjct:  151 AVFCKMWRDFFWHVRLARVTDHARCNEC-IKNSIL----IEGALPEPRRA----LVAKQKSHIALQSAHRKKYSVWSTESEHRPKQSLCIIIDGMDQAKTTIPHVSRRRLSKEMSNDTMMKTNLTGIVAHGKTPSLFV--HTWFPYLSHGSN---SVVNSITKVLRDVQAREGE-LPPKLRVQADNCGGQNKNKYVFAFMAMLVKFRIFEVVEMGFMIVGHTH 358          
BLAST of mRNA_H-elongata_contig10266.229.1 vs. uniprot
Match: A0A0G4GW76_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GW76_VITBC)

HSP 1 Score: 73.6 bits (179), Expect = 3.420e-10
Identity = 71/243 (29.22%), Postives = 103/243 (42.39%), Query Frame = 0
Query:  213 QCPHVKLKSSMGSAKCNTCTLANAELDHLRIHGGPEWRTSEAGLIERLLRDHEQDIADSR-GFYMDQRQKAI--------------------ATPHKLLCIAIDGSGQSSYACPTFPQETKDSSRDWKLRFKLIGTLVAGRSCHFFTLANNWETGANLTIQVLHSTLVSLFKKSLE-TGEP-LPRELHLQCDNYSRENKSRIVCAYLTMLIRWGLFDKVELHFGLDGHTH---DGRLPHGVLS 429
            +C H++ +     AKC+ C     EL H R+   P+ R +   ++       E  + + R G   D   K +                    A P   L + +D + Q  Y  P      K  +      FK +G  V G S  +  +      GA + + VL+     L K SLE  GE   P +L LQ DN + ENK++ V  Y  +LI  G+F+ VELHF + GHTH   DG   H +LS
Sbjct:    3 ECKHIRFRQQDRFAKCDYCQECKWELRHCRL---PDKRKA---ILRAFFTHLEFQMRNRRRGCRSDMHHKLVRLSMAGKVEMKWIARCLSSPAPPE--LYVTMDCADQKMYQMPRRELVAKTLTGIEFPHFKALGWTVWGVSHGYHFIPPRELHGACMVVDVLND----LLKASLEGLGEDERPSQLKLQLDNTAAENKNKYVLGYCAILIILGVFESVELHFLIVGHTHGPKDGH--HSILS 231          
BLAST of mRNA_H-elongata_contig10266.229.1 vs. uniprot
Match: A0A7S1P8L5_9ALVE (Hypothetical protein (Fragment) n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1P8L5_9ALVE)

HSP 1 Score: 63.9 bits (154), Expect = 2.330e-7
Identity = 51/141 (36.17%), Postives = 69/141 (48.94%), Query Frame = 0
Query:  294 IDGSGQSSYACPTFPQETKDSSRDWKLRFKLIGTLVAGRSCHFFTLANNWETGANLTIQVLHSTLVSLFKKSLE-TGEP-LPRELHLQCDNYSRENKSRIVCAYLTMLIRWGLFDKVELHFGLDGHTH---DGRLPHGVLS 429
            +D + Q  Y  P      K  +      FK +G  V G S  +  +      GA + + VL+     L K SLE  GE   P +L LQ DN + ENK++ V  Y  +LI  G+F+ VELHF + GHTH   DG   H +LS
Sbjct:    1 MDCADQKMYQMPRRELVAKTLTGIEFPHFKALGWTVWGVSHGYHFIPPRELHGACMVVDVLND----LLKASLEGLGEDERPSQLKLQLDNTAAENKNKYVLGYCAILIILGVFESVELHFLIVGHTHGPKDGH--HSILS 135          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10266.229.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835YXX5_9STRA1.040e-1627.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A388KH90_CHABU5.940e-1129.15Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A0G4GW76_VITBC3.420e-1029.22Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A7S1P8L5_9ALVE2.330e-736.17Hypothetical protein (Fragment) n=1 Tax=Vitrella b... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33153FAMILY NOT NAMEDcoord: 193..435
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..450
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 469..476
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 451..468
NoneNo IPR availableTMHMMTMhelixcoord: 451..473

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10266contigH-elongata_contig10266:714..7451 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10266.229.1mRNA_H-elongata_contig10266.229.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig10266 635..7476 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig10266.229.1 ID=prot_H-elongata_contig10266.229.1|Name=mRNA_H-elongata_contig10266.229.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=477bp
MNSKRKFVEKYPDSSRRIAKDKPSAPPQKFKSVGDITAGTCFLRRVRQKD
DDARTCCESGCNLKFSTEEIVKLRGDVPSRGIGTQESRKVWVRNCLAEGK
QLRLDGSSGNRKVCTAFFCAVTGCSRTLIASASQPGGTGMKKRHLPNSKA
DSIAAFLRELASRWEMEPDSCEILVALPSKRHVWMMYIQSPTCIHLGHED
CSYAYFVQMWSLQCPHVKLKSSMGSAKCNTCTLANAELDHLRIHGGPEWR
TSEAGLIERLLRDHEQDIADSRGFYMDQRQKAIATPHKLLCIAIDGSGQS
SYACPTFPQETKDSSRDWKLRFKLIGTLVAGRSCHFFTLANNWETGANLT
IQVLHSTLVSLFKKSLETGEPLPRELHLQCDNYSRENKSRIVCAYLTMLI
RWGLFDKVELHFGLDGHTHDGRLPHGVLSVLTGGRRNMLAFAFFKKCGSP
ISWFAYIFCLIAIPTNCLQRHLICRA*
back to top