mRNA_H-elongata_contig10266.229.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-elongata_contig10266.229.1 vs. uniprot
Match: A0A835YXX5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXX5_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 1.310e-16 Identity = 83/300 (27.67%), Postives = 123/300 (41.00%), Query Frame = 2 Query: 509 HLPNSK-ADSIAAFLRELASRWEMEPDSCEILVALPSKRHVWMMYIQSPTCIHLGHEDCSYAYFVQMWSLQCPHVKLKSSMGSAKCNTCTLANAELDHLRIHGGPEWRTSEAGLIERLLRDHEQDIADSRGFYMDQRQKAIATPHKL-----------------------LCIAIDGSGQSSYACPTFPQETKDSSRDWKLRFKLIGTLVAGRSCHFFTLANNWETGANLTIQVLHSTLVSLFKKSLETGEPLPRELHLQCDNYSRENKSRIVCAYLTMLIRWGLFDKVELHFGLDGHTH 1336
H P +K A S+ A+LR E +PDS + V P KR VW ++ P +K++ +M C+ C LD R + TS A + +H +D R YM + A A ++L L I +D + + P F ++ K +R L+G + G FT+ + G NLT L+ L +K+ G P P++L LQ DN +++NK+ V AY +L+ GLF VELHF L GHTH
Sbjct: 11 HAPKAKVAISVHAWLRIYWVTCESQPDSDQ--VHSPLKRKVWAEWL--------------------------PQLKVRKTMRFTTCSMCVDYRERLDQTR-----DPATSAAS--KTCYYNHIKDADAQRRHYMLAAELAEAQHNQLDRLLAAAEDAGEYTSTVTFVPDILTICMDAAAMEN-GLPQFHEKNKAVETGHAVRLTLLGAKMHGVKYSVFTVLKHLPGGGNLTSTALNEMLQQYREKN--PGRPFPKQLRLQLDNTNKDNKNHTVMAYCALLVLAGLFQTVELHFLLVGHTH 272
BLAST of mRNA_H-elongata_contig10266.229.1 vs. uniprot
Match: A0A388KH90_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KH90_CHABU) HSP 1 Score: 76.3 bits (186), Expect = 7.160e-11 Identity = 65/223 (29.15%), Postives = 104/223 (46.64%), Query Frame = 2 Query: 689 AYFVQMWSLQCPHVKLKSSMGSAKCNTCTLANAELDHLRIHGG-PEWRTSEAGLIERLLRDHEQDIADSRGFYMDQRQKAIATPHKLLCIAIDGSGQSSYACPTFPQE--TKDSSRDWKLRFKLIGTLVAGRSCHFFTLANNW----ETGANLTIQVLHSTLVSLFKKSLETGEPLPRELHLQCDNYSRENKSRIVCAYLTMLIRWGLFDKVELHFGLDGHTH 1336
A F +MW HV+L A+CN C + N+ L I G PE R + + + H + R Y ++ P + LCI IDG Q+ P + +K+ S D ++ L G + G++ F + W G+N V++S L GE LP +L +Q DN +NK++ V A++ ML+++ +F+ VE+ F + GHTH
Sbjct: 151 AVFCKMWRDFFWHVRLARVTDHARCNEC-IKNSIL----IEGALPEPRRA----LVAKQKSHIALQSAHRKKYSVWSTESEHRPKQSLCIIIDGMDQAKTTIPHVSRRRLSKEMSNDTMMKTNLTGIVAHGKTPSLFV--HTWFPYLSHGSN---SVVNSITKVLRDVQAREGE-LPPKLRVQADNCGGQNKNKYVFAFMAMLVKFRIFEVVEMGFMIVGHTH 358
BLAST of mRNA_H-elongata_contig10266.229.1 vs. uniprot
Match: A0A0G4GW76_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GW76_VITBC) HSP 1 Score: 73.6 bits (179), Expect = 4.040e-10 Identity = 71/243 (29.22%), Postives = 103/243 (42.39%), Query Frame = 2 Query: 716 QCPHVKLKSSMGSAKCNTCTLANAELDHLRIHGGPEWRTSEAGLIERLLRDHEQDIADSR-GFYMDQRQKAI--------------------ATPHKLLCIAIDGSGQSSYACPTFPQETKDSSRDWKLRFKLIGTLVAGRSCHFFTLANNWETGANLTIQVLHSTLVSLFKKSLE-TGEP-LPRELHLQCDNYSRENKSRIVCAYLTMLIRWGLFDKVELHFGLDGHTH---DGRLPHGVLS 1366
+C H++ + AKC+ C EL H R+ P+ R + ++ E + + R G D K + A P L + +D + Q Y P K + FK +G V G S + + GA + + VL+ L K SLE GE P +L LQ DN + ENK++ V Y +LI G+F+ VELHF + GHTH DG H +LS
Sbjct: 3 ECKHIRFRQQDRFAKCDYCQECKWELRHCRL---PDKRKA---ILRAFFTHLEFQMRNRRRGCRSDMHHKLVRLSMAGKVEMKWIARCLSSPAPPE--LYVTMDCADQKMYQMPRRELVAKTLTGIEFPHFKALGWTVWGVSHGYHFIPPRELHGACMVVDVLND----LLKASLEGLGEDERPSQLKLQLDNTAAENKNKYVLGYCAILIILGVFESVELHFLIVGHTHGPKDGH--HSILS 231
BLAST of mRNA_H-elongata_contig10266.229.1 vs. uniprot
Match: A0A7S1P8L5_9ALVE (Hypothetical protein (Fragment) n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1P8L5_9ALVE) HSP 1 Score: 63.9 bits (154), Expect = 2.640e-7 Identity = 51/141 (36.17%), Postives = 69/141 (48.94%), Query Frame = 2 Query: 959 IDGSGQSSYACPTFPQETKDSSRDWKLRFKLIGTLVAGRSCHFFTLANNWETGANLTIQVLHSTLVSLFKKSLE-TGEP-LPRELHLQCDNYSRENKSRIVCAYLTMLIRWGLFDKVELHFGLDGHTH---DGRLPHGVLS 1366
+D + Q Y P K + FK +G V G S + + GA + + VL+ L K SLE GE P +L LQ DN + ENK++ V Y +LI G+F+ VELHF + GHTH DG H +LS
Sbjct: 1 MDCADQKMYQMPRRELVAKTLTGIEFPHFKALGWTVWGVSHGYHFIPPRELHGACMVVDVLND----LLKASLEGLGEDERPSQLKLQLDNTAAENKNKYVLGYCAILIILGVFESVELHFLIVGHTHGPKDGH--HSILS 135 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10266.229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10266.229.1 >prot_H-elongata_contig10266.229.1 ID=prot_H-elongata_contig10266.229.1|Name=mRNA_H-elongata_contig10266.229.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=477bp MNSKRKFVEKYPDSSRRIAKDKPSAPPQKFKSVGDITAGTCFLRRVRQKDback to top mRNA from alignment at H-elongata_contig10266:635..7476+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig10266.229.1 ID=mRNA_H-elongata_contig10266.229.1|Name=mRNA_H-elongata_contig10266.229.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6842bp|location=Sequence derived from alignment at H-elongata_contig10266:635..7476+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig10266:635..7476+ >mRNA_H-elongata_contig10266.229.1 ID=mRNA_H-elongata_contig10266.229.1|Name=mRNA_H-elongata_contig10266.229.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2862bp|location=Sequence derived from alignment at H-elongata_contig10266:635..7476+ (Himanthalia elongata Himel1 dioecious)back to top |