Homology
BLAST of mRNA_H-elongata_contig102280.201.1 vs. uniprot
Match:
D7G280_ECTSI (TAFII55_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G280_ECTSI)
HSP 1 Score: 101 bits (251), Expect = 7.400e-21
Identity = 56/85 (65.88%), Postives = 59/85 (69.41%), Query Frame = 1
Query: 265 VTFEHEEIVEFEPWMADPDIATLGRLEGITIEITGPTEKSDADDAG--------RGSLSHPAPLPPPRLFGSELLYEHPEILLAV 495
VTFEHEEIV FEPWMADP A LGRLEGIT+EITG TEK +A A GS + PRLFGSELLYEHPEILLAV
Sbjct: 229 VTFEHEEIVPFEPWMADPKFAALGRLEGITLEITGTTEKPEAGAAXXXXXXXXXEGSTA-------PRLFGSELLYEHPEILLAV 306
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102280.201.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 7.40e-21 / Id = 65.88 Sequence D7G280_ECTSI
Match Name E-value Identity Description
D7G280_ECTSI 7.400e-21 65.88 TAFII55_N domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 100.5 Seed ortholog evalue 1.4e-18 Seed eggNOG ortholog 2880.D7G280 Preferred name TAF7 KEGG ko ko:K03132,ko:K19721 KEGG Pathway ko03022,ko04974,map03022,map04974 GOs GO:0000003,GO:0000122,GO:0000123,GO:0000296,GO:0000428,GO:0001067,GO:0001932,GO:0001933,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0003712,GO:0003713,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005737,GO:0005794,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006469,GO:0006725,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006928,GO:0007154,GO:0007165,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009719,GO:0009725,GO:0009755,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010563,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010639,GO:0010646,GO:0012505,GO:0014070,GO:0015696,GO:0015846,GO:0015893,GO:0016043,GO:0016070,GO:0016591,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019899,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0030154,GO:0030234,GO:0030317,GO:0030518,GO:0030520,GO:0030522,GO:0030880,GO:0031056,GO:0031057,GO:0031248,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032870,GO:0032991,GO:0033043,GO:0033044,GO:0033276,GO:0033673,GO:0033993,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034708,GO:0035034,GO:0035035,GO:0035065,GO:0035067,GO:0035097,GO:0035257,GO:0040011,GO:0042221,GO:0042325,GO:0042326,GO:0042493,GO:0042809,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043254,GO:0043401,GO:0043549,GO:0043933,GO:0044085,GO:0044087,GO:0044092,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044665,GO:0044703,GO:0044798,GO:0045859,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045936,GO:0045944,GO:0046483,GO:0046966,GO:0046982,GO:0046983,GO:0048232,GO:0048468,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0048583,GO:0048609,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051123,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051338,GO:0051348,GO:0051427,GO:0051674,GO:0051704,GO:0051716,GO:0055029,GO:0060255,GO:0060260,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0065009,GO:0070013,GO:0070461,GO:0070887,GO:0070897,GO:0071310,GO:0071339,GO:0071383,GO:0071396,GO:0071407,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:0097722,GO:0098772,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901796,GO:1901983,GO:1901984,GO:1902275,GO:1902493,GO:1902494,GO:1902531,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1905268,GO:1990234,GO:2000112,GO:2000113,GO:2000142,GO:2000756,GO:2000757,GO:2001141,GO:2001251 EggNOG free text desc. chromosome segregation EggNOG OGs COG5414@1,KOG4011@2759 COG Functional cat. K Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE ko00000,ko00001,ko00536,ko03021,ko03036 Hectar predicted targeting category other localisation Exons 3 Model size 927 Cds size 927 Stop 1 Start 0
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622929561.2427588-CDS-H-elongata_contig102280:234..666 1622929561.2427588-CDS-H-elongata_contig102280:234..666 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig102280 235..666 - 1691679070.8147407-CDS-H-elongata_contig102280:234..666 1691679070.8147407-CDS-H-elongata_contig102280:234..666 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig102280 235..666 - 1622929561.2651885-CDS-H-elongata_contig102280:1036..1171 1622929561.2651885-CDS-H-elongata_contig102280:1036..1171 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig102280 1037..1171 - 1691679070.8263867-CDS-H-elongata_contig102280:1036..1171 1691679070.8263867-CDS-H-elongata_contig102280:1036..1171 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig102280 1037..1171 - 1622929561.2814188-CDS-H-elongata_contig102280:1759..2119 1622929561.2814188-CDS-H-elongata_contig102280:1759..2119 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig102280 1760..2119 - 1691679070.837646-CDS-H-elongata_contig102280:1759..2119 1691679070.837646-CDS-H-elongata_contig102280:1759..2119 Himanthalia elongata Himel1 dioecious CDS H-elongata_contig102280 1760..2119 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig102280.201.1
>prot_H-elongata_contig102280.201.1 ID=prot_H-elongata_contig102280.201.1|Name=mRNA_H-elongata_contig102280.201.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=309bp
QVIRVESQVLKMQHDGSNAEGGDKKKLAANGISSAVAVASSGIGGSSRSS back to top mRNA from alignment at H-elongata_contig102280:235..2119-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig102280.201.1 ID=mRNA_H-elongata_contig102280.201.1|Name=mRNA_H-elongata_contig102280.201.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1885bp|location=Sequence derived from alignment at H-elongata_contig102280:235..2119- (Himanthalia elongata Himel1 dioecious)CAGGTGATTCGCGTCGAGAGCCAGGTTCTGAAGATGCAACACGATGGGTC
TAACGCAGAGGGCGGCGACAAGAAGAAATTAGCGGCGAACGGCATCTCCT
CTGCCGTCGCCGTTGCCTCCAGCGGGATTGGGGGATCTTCAAGGAGTTCC
CGCCCCGGGGGCGGCGATAGCGCCAAGGGGCGGAACGGAGGAGGTAGCGG
CGGAGGAGGTGGGGTGGGAGGAAGCGGTAGTAGCGGCGGAAACGGAGGCG
GGGGAGGAGAGAAGGTGACGTTCGAGCACGAGGAGATCGTGGAGTTCGAG
CCGTGGATGGCGGACCCCGATATTGCGACCCTCGGGCGATTGGAAGGGAT
TACAATCGAA GTAAGAGAGAGAGGAAGTAAAGACGAAAGAAAAATAAATC
GAAGTGAAGACGAAGGAGGGATATCTGGATGGATGGATGGATGGTAGCTC
TAGATGGGATTTTCCGTAGTGAAAAAAGAAGAGTCGGTCGGTGGCTTCTT
TGGAGAGGAGGGTTGGCTTTTCAGGGAGCGAACGGGGATAATCGAGCTAT
CATCGACGAAACGTCTCTTTTTTTTGTTGGTTGGTGGGGGGAGGGAGGAC
GGCTGACAACGGTTGGACAGAGTATCGGTCGACCTCGACAATATATTTCT
TGCCCAAACATCGCGGAAGAGGCGTGTATCTTTGTTTCGATGCGGTGCCT
TGATCGGATTGTGCGACTGGCTAGCTATACAAGTTCTCTCGACCATCGGC
GGGGAAAAGTGTCGTGCGCGCGATGGGGTTTTTTTTCTTATTTTTTTTTC
GATCTCGAGAGATATTATAGGAAAAAAAATAGGAACAACCCAAATAAGCA
CACACACACACACACACACACACACGTACTATTATAGCATTATTTTCTCC
CCTCCCCCCTCTCTCTTCTGTCTAATTTTGTTTTATTCCACTTGGTAGAT
CACCGGGCCGACCGAAAAATCAGACGCGGACGACGCAGGTCGTGGTAGCT
TGAGCCACCCTGCGCCGCTGCCCCCACCACGTTTGTTCGGGTCGGAACTT
CTCTACGAGCACCCGGAGATATTGCTGGCTGTG GTGAGAGATTCTTTCTC
CCCCTTAATACTCCACGTGGAAAGCGGTGGCATTGCCAACAGGAGGACGT
GGAGTGGGGTTTAGGTGGGGGGACAGGGGACAGGGAGTAAGCAGGGGGGC
GACTAACAAAGATGCGCCAAGTACTGCATTTTGTTTTTGTTCTTTTTTAC
TCTCCGCGAAACTGTCGTATGTTCGGATGTCCCGAAGGCAGGCTTTTTGG
TGGGAGTGGTGTAAGTGCGTTTGCTGCAAAGCGTACAACCTATCCTAGTG
TATGAGGGCCTTGTGATTTCCGCCGCGAGACGAGATGCAGGCCCCGAGCC
GCGCACCGGCTGCATCCCAGCTGCTCTTTCCGTTCCGTGCCTTGGTGGCG
CAGGCAGACTTGGTCAAAGACTCCGGTGCCCGAACCCCCGAACAGAAGGA
GAAGGTGGAAGGTGGAGCGACCACCTCTGCCTCTTTCGCGATACCGACCG
GCGCTACCGCGGTACAAGTGACGCGGGAAGTGCCGAAATCGGCTGACAAG
CAAAGGAGGCCGGAGACGGCTCTTGGCGAAGCGCAGCGAAAGATGCAGAA
GAAGGAGAAGCCGCGACAGGATTTCCAGCCAAAGCACGAGCTTCAAGAAC
AGAAAATGCTGCAGCAGCAACTACCGAAGCAAATACCACAGCAACTGCCA
CAGCAGCAACTGCCTCAGCAGCAGCTGCAGCAGCCGCAACAACCGCCGTT
GCAACAGCCGCCGTCGCAGCAGCCCCAGCAGCCGCAACAACTGTTGAGCG
TGGAAGAAAATATGGTAAGAGTTGCGCGCTTTTAA back to top Coding sequence (CDS) from alignment at H-elongata_contig102280:235..2119-
>mRNA_H-elongata_contig102280.201.1 ID=mRNA_H-elongata_contig102280.201.1|Name=mRNA_H-elongata_contig102280.201.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1854bp|location=Sequence derived from alignment at H-elongata_contig102280:235..2119- (Himanthalia elongata Himel1 dioecious) back to top