prot_H-elongata_contig101867.162.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig101867.162.1
Unique Nameprot_H-elongata_contig101867.162.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length141
Homology
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BLAST of mRNA_H-elongata_contig101867.162.1 vs. uniprot
Match: D8LEE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEE4_ECTSI)

HSP 1 Score: 179 bits (455), Expect = 3.060e-55
Identity = 87/144 (60.42%), Postives = 101/144 (70.14%), Query Frame = 0 
Query:    1 VSIGGCGDEDFRVCDLWVAPRTLTAVAFPPHVTQLRVEQCVRVAGSENDRGS-----------ESWECLGDPPPAKFYGTTAAVSHWPNAVNVAYSAAALCEKDSHCPGSFCDWQQQPRTCAPKLGEHFVESGSHFLDPRWKIL 133
            VS+  C ++DFRVCDL +APR LTAVAFPP  T LRV+QCV V  +                 E WECL +P PA++YGT     HWP+AV+V YSAAALCEKDSHCPGSFC  QQ+PR CAPKL EHF +SG HFLDPRW+IL
Sbjct:   31 VSMERCSEDDFRVCDLAIAPRALTAVAFPPDTTYLRVQQCVLVETAXXXXXXXXXXXXXXXXXEVWECLENPVPAEYYGTP---YHWPSAVDVDYSAAALCEKDSHCPGSFCSSQQEPRICAPKLEEHFQQSGEHFLDPRWEIL 171
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101867.162.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LEE4_ECTSI3.060e-5560.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig101867contigH-elongata_contig101867:188..1394 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig101867.162.1mRNA_H-elongata_contig101867.162.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig101867 188..1394 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig101867.162.1 ID=prot_H-elongata_contig101867.162.1|Name=mRNA_H-elongata_contig101867.162.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=141bp
VSIGGCGDEDFRVCDLWVAPRTLTAVAFPPHVTQLRVEQCVRVAGSENDR
GSESWECLGDPPPAKFYGTTAAVSHWPNAVNVAYSAAALCEKDSHCPGSF
CDWQQQPRTCAPKLGEHFVESGSHFLDPRWKILQRVGDGR*
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