mRNA_H-elongata_contig101867.162.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig101867.162.1
Unique NamemRNA_H-elongata_contig101867.162.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig101867.162.1 vs. uniprot
Match: D8LEE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEE4_ECTSI)

HSP 1 Score: 179 bits (455), Expect = 3.060e-55
Identity = 87/144 (60.42%), Postives = 101/144 (70.14%), Query Frame = 1 
Query:    1 VSIGGCGDEDFRVCDLWVAPRTLTAVAFPPHVTQLRVEQCVRVAGSENDRGS-----------ESWECLGDPPPAKFYGTTAAVSHWPNAVNVAYSAAALCEKDSHCPGSFCDWQQQPRTCAPKLGEHFVESGSHFLDPRWKIL 399
            VS+  C ++DFRVCDL +APR LTAVAFPP  T LRV+QCV V  +                 E WECL +P PA++YGT     HWP+AV+V YSAAALCEKDSHCPGSFC  QQ+PR CAPKL EHF +SG HFLDPRW+IL
Sbjct:   31 VSMERCSEDDFRVCDLAIAPRALTAVAFPPDTTYLRVQQCVLVETAXXXXXXXXXXXXXXXXXEVWECLENPVPAEYYGTP---YHWPSAVDVDYSAAALCEKDSHCPGSFCSSQQEPRICAPKLEEHFQQSGEHFLDPRWEIL 171
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101867.162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LEE4_ECTSI3.060e-5560.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig101867contigH-elongata_contig101867:188..1394 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_001990.1
Exons3
Model size423
Cds size423
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig101867.162.1prot_H-elongata_contig101867.162.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig101867 188..1394 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929558.2430792-CDS-H-elongata_contig101867:187..3991622929558.2430792-CDS-H-elongata_contig101867:187..399Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101867 188..399 +
1691679069.5004513-CDS-H-elongata_contig101867:187..3991691679069.5004513-CDS-H-elongata_contig101867:187..399Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101867 188..399 +
1622929558.2567008-CDS-H-elongata_contig101867:468..5321622929558.2567008-CDS-H-elongata_contig101867:468..532Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101867 469..532 +
1691679069.513316-CDS-H-elongata_contig101867:468..5321691679069.513316-CDS-H-elongata_contig101867:468..532Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101867 469..532 +
1622929558.2692294-CDS-H-elongata_contig101867:1247..13941622929558.2692294-CDS-H-elongata_contig101867:1247..1394Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101867 1248..1394 +
1691679069.523306-CDS-H-elongata_contig101867:1247..13941691679069.523306-CDS-H-elongata_contig101867:1247..1394Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101867 1248..1394 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig101867.162.1

>prot_H-elongata_contig101867.162.1 ID=prot_H-elongata_contig101867.162.1|Name=mRNA_H-elongata_contig101867.162.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=141bp
VSIGGCGDEDFRVCDLWVAPRTLTAVAFPPHVTQLRVEQCVRVAGSENDR
GSESWECLGDPPPAKFYGTTAAVSHWPNAVNVAYSAAALCEKDSHCPGSF
CDWQQQPRTCAPKLGEHFVESGSHFLDPRWKILQRVGDGR*
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mRNA from alignment at H-elongata_contig101867:188..1394+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig101867.162.1 ID=mRNA_H-elongata_contig101867.162.1|Name=mRNA_H-elongata_contig101867.162.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1207bp|location=Sequence derived from alignment at H-elongata_contig101867:188..1394+ (Himanthalia elongata Himel1 dioecious)
GTGAGCATTGGCGGGTGCGGCGACGAAGACTTCCGGGTGTGCGACCTTTG
GGTTGCACCACGAACCCTCACGGCCGTCGCTTTCCCACCACACGTGACCC
AGCTTCGAGTGGAGCAATGCGTGCGCGTGGCGGGATCAGAAAACGACCGC
GGGAGCGAGAGTTGGGAGTGTCTGGGCGATCCTCCCCCGGCGAAATTTTA
CGGGACAACGGCGTATTACGATAGGTCCACCGAGGGTGGTAGCGGTAGCG
GTAGTAGCAGCGGCAGCGGGCAAAAGGGAAGCGCCGTGTCTCACTGGCCA
AACGCGGTGAACGTGGCGTACTCAGCTGCCGCACTTTGCGAAAAGGTGCT
CAATATATACAAAACGTTTTTAACATATTTTTATTTTTTTATTTTGAGTG
TGTACCCCGATCGGCCCTGGTTCTCGACAAATTTCAGGAATAGGCGAAAT
ACCCTGGACTGCACCTCTCACGGCGGTGCTAAGAAGGCGTGGATGTTCGG
AGGGTTGGAATGGATTCAGTTCATCTATAATATATCTATATAGATACTAG
GAAGTATTTGATACCGGAAGCGTTTAAAAAACAAACGAAACAAATCTGCA
GTTTAAAAAAGAAAAGGAAAAAGGTACCCCTTCACATCGGTTCGGGGGAG
GGATGTGAGGGGGGGGGGGGGTTATATCTCGCGCCATGCGTGGTGCTACT
GCGCATTCGAAAGACGCGCCATAGCCGCCCCTCAAAAACACCGCCAGCGG
CATGCAATCACCTTCTCGACCATCCATACCCCCAGTGAGAGCGCCCTCAA
ATGGTAGGCAACGGAGAGAGAGAGAGACGATCGACCATTCAACGATACGT
AATTCCAAACACCTAGCGCAGTCAGCGAAAAAAATAAACCGCCTCGATTT
TGAAATTGTAGCCGACCGTTTCGCAATCGAAATAGCCCACCTTCCCCTCC
CCCTCTCCCTCGTTTTTTTTCTTCTCTTTTTTCTCTCTTCTTCCTTCCGT
CCCACACATAATACATTTTTAAAAATATATTTTCTCCACCAACGATGGAT
TTGAGTTCAGGATAGCCACTGCCCAGGTTCCTTCTGCGACTGGCAGCAGC
AGCCGAGAACATGTGCACCCAAACTCGGAGAGCACTTTGTCGAGAGCGGT
TCGCACTTCCTGGATCCTAGGTGGAAGATTCTTCAACGCGTTGGCGATGG
GCGATGA
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Coding sequence (CDS) from alignment at H-elongata_contig101867:188..1394+

>mRNA_H-elongata_contig101867.162.1 ID=mRNA_H-elongata_contig101867.162.1|Name=mRNA_H-elongata_contig101867.162.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=846bp|location=Sequence derived from alignment at H-elongata_contig101867:188..1394+ (Himanthalia elongata Himel1 dioecious)
GTGAGCATTGGCGGGTGCGGCGACGAAGACTTCCGGGTGTGCGACCTTTG
GGTTGCACCACGAACCCTCACGGCCGTCGCTTTCCCACCACACGTGACCC
AGCTTCGAGTGGAGCAATGCGTGCGCGTGGCGGGATCAGAAAACGACCGC
GGGAGCGAGAGTTGGGAGTGTCTGGGCGATCCTCCCCCGGCGAAATTTTA
CGGGACAACGGCGTGAGCATTGGCGGGTGCGGCGACGAAGACTTCCGGGT
GTGCGACCTTTGGGTTGCACCACGAACCCTCACGGCCGTCGCTTTCCCAC
CACACGTGACCCAGCTTCGAGTGGAGCAATGCGTGCGCGTGGCGGGATCA
GAAAACGACCGCGGGAGCGAGAGTTGGGAGTGTCTGGGCGATCCTCCCCC
GGCGAAATTTTACGGGACAACGGCCGCCGTGTCTCACTGGCCAAACGCGG
TGAACGTGGCGTACTCAGCTGCCGCACTTTGCGAAAAGCGCCGTGTCTCA
CTGGCCAAACGCGGTGAACGTGGCGTACTCAGCTGCCGCACTTTGCGAAA
AGGATAGCCACTGCCCAGGTTCCTTCTGCGACTGGCAGCAGCAGCCGAGA
ACATGTGCACCCAAACTCGGAGAGCACTTTGTCGAGAGCGGTTCGCACTT
CCTGGATCCTAGGTGGAAGATTCTTCAACGCGTTGGCGATGGGCGATGAG
ATAGCCACTGCCCAGGTTCCTTCTGCGACTGGCAGCAGCAGCCGAGAACA
TGTGCACCCAAACTCGGAGAGCACTTTGTCGAGAGCGGTTCGCACTTCCT
GGATCCTAGGTGGAAGATTCTTCAACGCGTTGGCGATGGGCGATGA
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