prot_H-elongata_contig101700.144.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig101700.144.1
Unique Nameprot_H-elongata_contig101700.144.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length154
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101700.144.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 90..138
e-value: 6.1E-12
score: 45.6
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 27..56
e-value: 2.6E-4
score: 18.9
coord: 93..127
e-value: 3.3E-6
score: 24.9
coord: 59..92
e-value: 1.6E-8
score: 32.2
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 26..53
e-value: 0.1
score: 12.9
coord: 59..87
e-value: 3.4E-5
score: 23.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1..20
score: 6.16
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 21..55
score: 9.361
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 126..153
score: 5.777
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 91..125
score: 11.049
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 56..90
score: 11.531
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..149
e-value: 2.5E-43
score: 150.6
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 4..143

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig101700contigH-elongata_contig101700:231..2124 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig101700.144.1mRNA_H-elongata_contig101700.144.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig101700 231..2124 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig101700.144.1 ID=prot_H-elongata_contig101700.144.1|Name=mRNA_H-elongata_contig101700.144.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=154bp
GRRREALQVLSRIQTVGLKPNQVSFLGAISACSKVADSGRALRLLREMVD
AGIAPDLKCYSSAISACGKQGRWRQAVALLDDMRAAGTEPNVVCYNAAIS
ACGKGKQWQPAVSLLETMRGRGIAPDVISYNAAIDACGKSGRLVRGDNGK
SGV*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf