mRNA_H-elongata_contig101700.144.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig101700.144.1
Unique NamemRNA_H-elongata_contig101700.144.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101700.144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig101700contigH-elongata_contig101700:231..2124 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size462
Cds size462
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig101700.144.1prot_H-elongata_contig101700.144.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig101700 231..2124 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929556.3342316-CDS-H-elongata_contig101700:230..4031622929556.3342316-CDS-H-elongata_contig101700:230..403Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101700 231..403 +
1691679068.6980946-CDS-H-elongata_contig101700:230..4031691679068.6980946-CDS-H-elongata_contig101700:230..403Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101700 231..403 +
1622929556.353649-CDS-H-elongata_contig101700:870..9731622929556.353649-CDS-H-elongata_contig101700:870..973Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101700 871..973 +
1691679068.7149956-CDS-H-elongata_contig101700:870..9731691679068.7149956-CDS-H-elongata_contig101700:870..973Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101700 871..973 +
1622929556.3710368-CDS-H-elongata_contig101700:1938..21241622929556.3710368-CDS-H-elongata_contig101700:1938..2124Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101700 1939..2124 +
1691679068.724547-CDS-H-elongata_contig101700:1938..21241691679068.724547-CDS-H-elongata_contig101700:1938..2124Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101700 1939..2124 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig101700.144.1

>prot_H-elongata_contig101700.144.1 ID=prot_H-elongata_contig101700.144.1|Name=mRNA_H-elongata_contig101700.144.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=154bp
GRRREALQVLSRIQTVGLKPNQVSFLGAISACSKVADSGRALRLLREMVD
AGIAPDLKCYSSAISACGKQGRWRQAVALLDDMRAAGTEPNVVCYNAAIS
ACGKGKQWQPAVSLLETMRGRGIAPDVISYNAAIDACGKSGRLVRGDNGK
SGV*
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mRNA from alignment at H-elongata_contig101700:231..2124+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig101700.144.1 ID=mRNA_H-elongata_contig101700.144.1|Name=mRNA_H-elongata_contig101700.144.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1894bp|location=Sequence derived from alignment at H-elongata_contig101700:231..2124+ (Himanthalia elongata Himel1 dioecious)
GGACGGAGAAGGGAGGCGTTGCAGGTGCTGTCCAGGATCCAAACCGTGGG
CTTGAAGCCGAACCAAGTATCTTTCCTCGGAGCCATTTCGGCCTGCTCGA
AAGTTGCAGACTCGGGGAGAGCGCTGAGGCTGCTGAGAGAGATGGTCGAT
GCCGGAATCGCGCCCGATCTCAAGTGAGGCAGGCGTTTGCCGCGGAACGG
AATGAAATAGCATGGAGTGGGCATTTATGATGTCCGTGTTATTATTTTGT
CTTCGGTGTTTCTGCCGCCTTTTTTGGGGGGGGGGGACTAGAAGACCATA
CCGCCTTTGTTTTTTTGGGGGGTAGGTGGGGTGGGGGGGGGGGCACGCCT
GTTTTTTACGGGGGGAGTACTCAAAGTCTGCGTGCCTTAGCTGCTAGACC
ATTGGTAAACCGGGCGTCCTCGGGAGGATGGAATGCATGAGGGGGCATTA
CAGCGGAAATGAAAGTTTAGTTAATCCTCCTCGCGCTACTGTGCAAGCCC
CAACGTTCCGTGCGGCGAGTTATTGTTACTGTGTTATGTGTAAACAGTAT
AATATACTCATTATTTTTTCCGTGTTTTATCTTCTTTTGCTTGTGTTGCC
ACTTGCTGTTTTTTCTATTGGGGGGGCGGTGGTTACTCAGGTGCTACAGC
TCGGCAATCTCGGCGTGTGGAAAACAGGGCAGATGGCGGCAGGCAGTGGC
GCTGCTCGACGACATGAGAGCCGCTGGCACTGAGCCTAACGTGGTACGGC
CTCTACACCCTAACCCCGAACATGGTCGACGACGAAGCACGCAATCGTTA
CTGTTCCTGCTGCAAGTCAGCGCTGATGCTTCGCTGATGCTTGTAGGAGC
GCTGGCATGTTACACCTCACAATAAACTGACTACTCGTAGTGGATCGAGT
TCGATTGCGTGCTACATCTAATCTAATAAAATCTAGCCTTTGGAAGGAGT
GGTTGCGTCGTGAATGAACTTGATAACAGCCATGTAGTACATAAGGAGTT
CGGCTCACCGAGTGACTCGTAGTAGGAGGTGTGGCACTGATTCTCTGGTA
TGAGTCTATAATTCTGCTTCCCTTTTTATCAATTTTCTTTTTTGGTACGT
GCTCTTTCATTTCAAATGTTTTTCAAATCTCCCTTTATGACGATGAGCTC
TCCAACTTGCTATTCTGCAGCAACGTTATTAGTTAGTATTTCCCATTGTC
CATCATACGTCATCCCATATGTGATCCTAAGGGACCATCAACCAGTCCAC
CAATCAACCAACCAACCAATCCATCTGCAGTATCTCTCCCCGGTTTGTTA
ACGCCTCCCTACGAATTTTACCGCGATTCGAGTTATTGACAGCTCTCACC
TCAAGGCCTCGTTGACCACTGGTCCAACTTTGCTTACGTACTCAAAATCA
AAATAAATACTTATTACTTCGAGGCTATAGTCCAGTATAATATATGTTTA
TATATAAATGAATATGTTATGCCGCACTGTATTATACAATACGATGCGTC
GCAATACGATACGGTTCAATATCATACGGTTCTATACGATACGGCCTGGT
ATTATTAACATACAGTACCACGTACGTTGTAACATACGTATTAAATCGAT
AACCTTAAGAGCCTAGATATACCTCATTTTTTAATGCACCATCAGCTTCA
TGGCGGCCTAAAGCTGCCGGTGACTGTTCTATTTCTCGACCCATCGAACG
CCTGCCAGGTGTGCTACAACGCCGCCATCTCGGCGTGCGGAAAGGGAAAG
CAGTGGCAGCCCGCCGTAAGCCTTCTGGAGACCATGCGAGGCAGAGGGAT
CGCGCCGGACGTGATCAGCTACAACGCCGCCATAGATGCCTGCGGCAAGA
GCGGGAGGTTAGTTCGAGGGGATAATGGCAAGAGCGGCGTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig101700:231..2124+

>mRNA_H-elongata_contig101700.144.1 ID=mRNA_H-elongata_contig101700.144.1|Name=mRNA_H-elongata_contig101700.144.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=924bp|location=Sequence derived from alignment at H-elongata_contig101700:231..2124+ (Himanthalia elongata Himel1 dioecious)
GGACGGAGAAGGGAGGCGTTGCAGGTGCTGTCCAGGATCCAAACCGTGGG
CTTGAAGCCGAACCAAGTATCTTTCCTCGGAGCCATTTCGGCCTGCTCGA
AAGTTGCAGACTCGGGGAGAGCGCTGAGGCTGCTGAGAGAGATGGTCGAT
GCCGGAATCGCGCCCGATCTCAAGGACGGAGAAGGGAGGCGTTGCAGGTG
CTGTCCAGGATCCAAACCGTGGGCTTGAAGCCGAACCAAGTATCTTTCCT
CGGAGCCATTTCGGCCTGCTCGAAAGTTGCAGACTCGGGGAGAGCGCTGA
GGCTGCTGAGAGAGATGGTCGATGCCGGAATCGCGCCCGATCTCAAGTGC
TACAGCTCGGCAATCTCGGCGTGTGGAAAACAGGGCAGATGGCGGCAGGC
AGTGGCGCTGCTCGACGACATGAGAGCCGCTGGCACTGAGCCTAACGTGG
TGCTACAGCTCGGCAATCTCGGCGTGTGGAAAACAGGGCAGATGGCGGCA
GGCAGTGGCGCTGCTCGACGACATGAGAGCCGCTGGCACTGAGCCTAACG
TGGTGTGCTACAACGCCGCCATCTCGGCGTGCGGAAAGGGAAAGCAGTGG
CAGCCCGCCGTAAGCCTTCTGGAGACCATGCGAGGCAGAGGGATCGCGCC
GGACGTGATCAGCTACAACGCCGCCATAGATGCCTGCGGCAAGAGCGGGA
GGTTAGTTCGAGGGGATAATGGCAAGAGCGGCGTGTGAGTGTGCTACAAC
GCCGCCATCTCGGCGTGCGGAAAGGGAAAGCAGTGGCAGCCCGCCGTAAG
CCTTCTGGAGACCATGCGAGGCAGAGGGATCGCGCCGGACGTGATCAGCT
ACAACGCCGCCATAGATGCCTGCGGCAAGAGCGGGAGGTTAGTTCGAGGG
GATAATGGCAAGAGCGGCGTGTGA
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