prot_H-elongata_contig101607.137.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig101607.137.1
Unique Nameprot_H-elongata_contig101607.137.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length179
Homology
[Close]
BLAST of mRNA_H-elongata_contig101607.137.1 vs. uniprot
Match: A0A6H5JT61_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT61_9PHAE)

HSP 1 Score: 194 bits (494), Expect = 7.130e-55
Identity = 97/181 (53.59%), Postives = 126/181 (69.61%), Query Frame = 0 
Query:    6 GVAYVAETSPDIWRRRLGHMNPRNMDLLLRKKGTDVNYTGIMTDCDICAVTKSRQPPHPKTTMRKTTKPMELIYMDLMGPITPVAKGGCKYISKFTDDFSRMKEIFLLRSKMETAESLHQYNMTMVVPLGLRIENIRCDKGGENTRG-------NDGINVKYTATNTPQQNGVSERDGQTL 179
            GVA+    + +   RRLGH+N R+M LL +K+  +V+++  MT CDICA++KS Q  HPK T R+TT PM L+Y D+MG  TP+AKGG  Y+S F D +SR+KEI+LL++K ET  +LH YNM +  PLG  IE IRCD+G EN          + GI ++Y ATNTPQQNGVSERDGQTL
Sbjct:   97 GVAFATTVNANTPHRRLGHLNFRSMKLLRKKEENEVDFSDSMTPCDICAISKSTQLAHPKKTSRETTAPMLLVYTDIMGKTTPLAKGGFGYVSMFNDAYSRIKEIYLLKAKSETVRALHAYNMQVAAPLGRGIEIIRCDRGRENVANEFTTYCMDSGITIEYAATNTPQQNGVSERDGQTL 277
[Close]
BLAST of mRNA_H-elongata_contig101607.137.1 vs. uniprot
Match: A0A6H5JYD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD3_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 8.120e-55
Identity = 98/181 (54.14%), Postives = 126/181 (69.61%), Query Frame = 0 
Query:    6 GVAYVAETSPDIWRRRLGHMNPRNMDLLLRKKGTDVNYTGIMTDCDICAVTKSRQPPHPKTTMRKTTKPMELIYMDLMGPITPVAKGGCKYISKFTDDFSRMKEIFLLRSKMETAESLHQYNMTMVVPLGLRIENIRCDKGGENTRG-------NDGINVKYTATNTPQQNGVSERDGQTL 179
            GVA  A  + + W R L H+N R+M+LL +K+   V+++  MT CDICA++KSRQ  HP+ T R+TT PM+L+Y D MG  TP+AKGG  Y+SKFTD +S MKEI+LL++  ET  +LH YNM +  PLG RIE IRC+ GGEN          +  I ++Y ATNTPQQNGVSERDGQTL
Sbjct:  299 GVACAATVNANTWHRWLRHLNFRSMELLRKKEDNGVDFSDSMTPCDICAISKSRQLAHPEKTNRETTAPMQLVYTDNMGKTTPLAKGGFGYVSKFTDAYSWMKEIYLLKAISETVRALHAYNMQVAAPLGRRIEIIRCESGGENVANEFTKYFMDSDITIEYAATNTPQQNGVSERDGQTL 479
[Close]
BLAST of mRNA_H-elongata_contig101607.137.1 vs. uniprot
Match: A0A6H5KZ34_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ34_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 9.520e-53
Identity = 87/186 (46.77%), Postives = 117/186 (62.90%), Query Frame = 0 
Query:    4 TPGVAYVAETSPDIWRRRLGHMNPRNMDLLLRKKGTDVNYTGIMTDCDICAVTKSRQPPHPKTTMRKTTKPMELIYMDLMGPITPVAK---GGCKYISKFTDDFSRMKEIFLLRSKMETAESLHQYNMTMVVPLGLRIENIRCDKGGENTRG-------NDGINVKYTATNTPQQNGVSERDGQTL 179
            T         S D W RRLGH+N R++D+L +  GT V+Y   ++ C +C + K +Q PHPK + R+ ++P +L+ +D MGP+ P AK   G   Y  K TDD+++MKE++LLR K +T E++H YNM +    G RIE IRCDKGGENT         N  I ++Y ATNTPQQ GVSE DGQTL
Sbjct:   31 TANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSEGDGQTL 216
[Close]
BLAST of mRNA_H-elongata_contig101607.137.1 vs. uniprot
Match: A0A6H5KCM0_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCM0_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 1.720e-50
Identity = 88/186 (47.31%), Postives = 118/186 (63.44%), Query Frame = 0 
Query:    4 TPGVAYVAETSPDIWRRRLGHMNPRNMDLLLRKKGTDVNYTGIMTDCDICAVTKSRQPPHPKTTMRKTTKPMELIYMDLMGPITPVAK---GGCKYISKFTDDFSRMKEIFLLRSKMETAESLHQYNMTMVVPLGLRIENIRCDKGGENTRG-------NDGINVKYTATNTPQQNGVSERDGQTL 179
            T         S D W RRLGH+N R++D+L +  GT V+Y   ++ C +C + K +Q PHPK + R+ ++P +L+ +D MGP+ P AK   G   Y  K TDD+++MKE++LLR K +T E++H YNM +    G RIE IRCDKGGENT         N  I ++Y ATNTPQQ GVSERDGQTL
Sbjct:   31 TANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDNCKNSAIKLEYAATNTPQQLGVSERDGQTL 216
[Close]
BLAST of mRNA_H-elongata_contig101607.137.1 vs. uniprot
Match: A0A6H5KVF6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF6_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 2.760e-50
Identity = 88/186 (47.31%), Postives = 119/186 (63.98%), Query Frame = 0 
Query:    4 TPGVAYVAETSPDIWRRRLGHMNPRNMDLLLRKKGTDVNYTGIMTDCDICAVTKSRQPPHPKTTMRKTTKPMELIYMDLMGPITPVAK---GGCKYISKFTDDFSRMKEIFLLRSKMETAESLHQYNMTMVVPLGLRIENIRCDKGGENTRG-------NDGINVKYTATNTPQQNGVSERDGQTL 179
            T         S D W RRLGH+N R++D+L +  GT+V+Y   ++ C +C + K +Q PHPK + R+ ++P +L+ +D MGP+ P AK   G   Y  K TDD+++MKE++LLR K +T E++H YNM +    G RIE IRCDKGGENT         N  I ++Y ATNTPQQ GVSERDGQTL
Sbjct:  355 TANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTEVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKVTDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTL 540
[Close]
BLAST of mRNA_H-elongata_contig101607.137.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 2.180e-49
Identity = 88/186 (47.31%), Postives = 118/186 (63.44%), Query Frame = 0 
Query:    4 TPGVAYVAETSPDIWRRRLGHMNPRNMDLLLRKKGTDVNYTGIMTDCDICAVTKSRQPPHPKTTMRKTTKPMELIYMDLMGPITPVAK---GGCKYISKFTDDFSRMKEIFLLRSKMETAESLHQYNMTMVVPLGLRIENIRCDKGGENTRG-------NDGINVKYTATNTPQQNGVSERDGQTL 179
            T         S D W RRLGH+N R++D+L +  GT V+Y   ++ C +C + K +Q PHPK + R+ ++P +L+ +D MGP+ P AK   G   Y  K TDD+++MKE++LLR K +T E++H YNM +    G RIE IRCDKGGENT         N  I ++Y ATNTPQQ GVSERDGQTL
Sbjct:   31 TANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTL 216
[Close]
BLAST of mRNA_H-elongata_contig101607.137.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 3.680e-49
Identity = 87/186 (46.77%), Postives = 117/186 (62.90%), Query Frame = 0 
Query:    4 TPGVAYVAETSPDIWRRRLGHMNPRNMDLLLRKKGTDVNYTGIMTDCDICAVTKSRQPPHPKTTMRKTTKPMELIYMDLMGPITPVAK---GGCKYISKFTDDFSRMKEIFLLRSKMETAESLHQYNMTMVVPLGLRIENIRCDKGGENTRG-------NDGINVKYTATNTPQQNGVSERDGQTL 179
            T         S D W RRLGH+N R++D+L +  GT V+Y   ++ C +C + K +Q PHPK + R+ ++P +L+ +D MGP+ P AK   G   Y  K TDD+++MKE++LLR K +T E++H YNM +    G RIE IRCDKGGENT         N  I ++Y ATNTPQQ G SERDGQTL
Sbjct:  407 TANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTREISRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGASERDGQTL 592
[Close]
BLAST of mRNA_H-elongata_contig101607.137.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 5.240e-49
Identity = 88/186 (47.31%), Postives = 118/186 (63.44%), Query Frame = 0 
Query:    4 TPGVAYVAETSPDIWRRRLGHMNPRNMDLLLRKKGTDVNYTGIMTDCDICAVTKSRQPPHPKTTMRKTTKPMELIYMDLMGPITPVAK---GGCKYISKFTDDFSRMKEIFLLRSKMETAESLHQYNMTMVVPLGLRIENIRCDKGGENTRG-------NDGINVKYTATNTPQQNGVSERDGQTL 179
            T         S D W RRLGH+N R++D+L +  GT V+Y   ++ C +C + K +Q PHPK + R+ ++P +L+ +D MGP+ P AK   G   Y  K TDD+++MKE++LLR K +T E++H YNM +    G RIE IRCDKGGENT         N  I ++Y ATNTPQQ GVSERDGQTL
Sbjct:   31 TANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTL 216
[Close]
BLAST of mRNA_H-elongata_contig101607.137.1 vs. uniprot
Match: A0A6H5KCT3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT3_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 5.370e-49
Identity = 88/186 (47.31%), Postives = 118/186 (63.44%), Query Frame = 0 
Query:    4 TPGVAYVAETSPDIWRRRLGHMNPRNMDLLLRKKGTDVNYTGIMTDCDICAVTKSRQPPHPKTTMRKTTKPMELIYMDLMGPITPVAK---GGCKYISKFTDDFSRMKEIFLLRSKMETAESLHQYNMTMVVPLGLRIENIRCDKGGENTRG-------NDGINVKYTATNTPQQNGVSERDGQTL 179
            T         S D W RRLGH+N R++D+L +  GT V+Y   ++ C +C + K +Q PHPK + R+ ++P +L+ +D MGP+ P AK   G   Y  K TDD+++MKE++LLR K +T E++H YNM +    G RIE IRCDKGGENT         N  I ++Y ATNTPQQ GVSERDGQTL
Sbjct:   31 TANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTL 216
[Close]
BLAST of mRNA_H-elongata_contig101607.137.1 vs. uniprot
Match: A0A6H5K1R7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1R7_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 2.900e-48
Identity = 87/186 (46.77%), Postives = 117/186 (62.90%), Query Frame = 0 
Query:    4 TPGVAYVAETSPDIWRRRLGHMNPRNMDLLLRKKGTDVNYTGIMTDCDICAVTKSRQPPHPKTTMRKTTKPMELIYMDLMGPITPVAK---GGCKYISKFTDDFSRMKEIFLLRSKMETAESLHQYNMTMVVPLGLRIENIRCDKGGENTRG-------NDGINVKYTATNTPQQNGVSERDGQTL 179
            T         S D W RRLGH+N R++D+L +  GT V+Y   ++ C +C + K +Q PHPK + R+ ++P +L+ +D MGP+ P AK   G   Y  K TDD+++MKE++LLR K +T E++H YNM +    G RIE IRCDKGGENT         N  I ++Y ATNTPQQ G SERDGQTL
Sbjct:   31 TANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGGSERDGQTL 216
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101607.137.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JT61_9PHAE7.130e-5553.59Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JYD3_9PHAE8.120e-5554.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZ34_9PHAE9.520e-5346.77Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KCM0_9PHAE1.720e-5047.31Integrase catalytic domain-containing protein n=5 ... [more]
A0A6H5KVF6_9PHAE2.760e-5047.31Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K500_9PHAE2.180e-4947.31Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KT84_9PHAE3.680e-4946.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJR8_9PHAE5.240e-4947.31Integrase catalytic domain-containing protein n=11... [more]
A0A6H5KCT3_9PHAE5.370e-4947.31Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K1R7_9PHAE2.900e-4846.77Integrase catalytic domain-containing protein (Fra... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 72..179
e-value: 1.1E-8
score: 35.3
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 70..179
score: 9.355
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 64..179
e-value: 1.1E-13
score: 52.8
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 12..174
NoneNo IPR availablePANTHERPTHR11439:SF250coord: 12..174
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 70..179

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig101607contigH-elongata_contig101607:1748..2284 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig101607.137.1mRNA_H-elongata_contig101607.137.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig101607 1748..2284 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig101607.137.1 ID=prot_H-elongata_contig101607.137.1|Name=mRNA_H-elongata_contig101607.137.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=179bp
DDATPGVAYVAETSPDIWRRRLGHMNPRNMDLLLRKKGTDVNYTGIMTDC
DICAVTKSRQPPHPKTTMRKTTKPMELIYMDLMGPITPVAKGGCKYISKF
TDDFSRMKEIFLLRSKMETAESLHQYNMTMVVPLGLRIENIRCDKGGENT
RGNDGINVKYTATNTPQQNGVSERDGQTL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR036397RNaseH_sf
IPR039537Retrotran_Ty1/copia-like
IPR012337RNaseH-like_sf